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Python |
4 |
Pipeline for BLAST analysis of high-throughput DNA sequencing data. |
Aug 01, 2017 |
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Java |
307 |
A quality control analysis tool for high throughput sequencing data |
Apr 27, 2023 |
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R |
3 |
Liquid Biopsy Sequencing analysis tools for cell free DNA sequencing |
Jun 18, 2018 |
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Python |
2 |
High-throughput sequencing pipeline software |
Oct 19, 2019 |
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|
Python |
2 |
High throughput sequencing analysis tools |
Oct 01, 2018 |
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Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
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Shell |
5 |
Demonstration files and scripts for our high-throughput sequencing analysis pipeline |
Jul 31, 2015 |
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R |
19 |
High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants |
Oct 09, 2022 |
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HTML |
5 |
Analysis Framework for Biological Data from High Throughput Sequencing Experiments |
May 04, 2015 |
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Java |
6 |
SeqCode: Java code for the analysis of high-throughput sequencing data |
Mar 03, 2023 |
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C++ |
14 |
Identifying repeats in high-throughput sequencing data |
Aug 15, 2022 |
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Python |
13 |
Single-Cell Sequencing Quality Control and Processing Software |
Apr 13, 2023 |
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R |
3 |
A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control. |
Mar 13, 2024 |
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C |
2 |
A high-throughput analysis framework for Y-chromosomal next-generation sequencing data |
Mar 08, 2022 |
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HTML |
3 |
Third-generation single cell sequencing (Pacbio) analysis pipeline. |
Apr 23, 2023 |
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JavaScript |
2 |
Clinical DNA Sequencing Analysis and Data Warehouse |
Mar 11, 2015 |
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C |
631 |
C library for high-throughput sequencing data formats |
Aug 11, 2022 |
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C |
5 |
C library for high-throughput sequencing data formats |
Apr 05, 2023 |
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C |
3 |
C library for high-throughput sequencing data formats |
Jul 18, 2019 |
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C |
4 |
C library for high-throughput sequencing data formats |
Jan 07, 2022 |
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Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
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R |
6 |
A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data. |
Mar 01, 2023 |
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HTML |
2 |
Clonal hematopoiesis detection in cancer patients using cell free DNA sequencing |
Apr 19, 2023 |
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Shell |
4 |
This repository hosts scripts and tools for analysis of high throughput sequencing data. |
Jan 03, 2022 |
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Python |
4 |
Best-practice pipelines for fully automated high throughput sequencing analysis |
Apr 28, 2021 |
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R |
51 |
fastqcr: Quality Control of Sequencing Data |
Apr 22, 2022 |
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Groovy |
24 |
A Nextflow pipeline to identify quality control issues with new sequencing data. |
Apr 05, 2023 |
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HTML |
18 |
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data |
May 14, 2023 |
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Python |
6 |
Web app for high throughput cell proliferation data |
Mar 21, 2023 |
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None |
2 |
An efficient and flexible pipeline for high-throughput analysis of WGBS data |
Dec 24, 2019 |
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Nextflow |
3 |
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control |
Dec 15, 2021 |
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Python |
19 |
Comprehensive analysis of small RNA sequencing data |
Apr 09, 2023 |
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Python |
5 |
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data |
Dec 21, 2022 |
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Python |
13 |
A server for maintaining high-throughput sequencing QC data |
May 09, 2023 |
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Shell |
11 |
High throughput sequencing -- Amplicon sequencing, mainly include 16S, 18S and ITS for microbiome analysis |
Jan 16, 2023 |
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Python |
4 |
High-throughput tomography pipeline |
Apr 13, 2023 |
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C++ |
20 |
Quality Control of Next Generation Sequencing Data |
Mar 01, 2023 |
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Python |
51 |
Quality control tools for nanopore sequencing data |
May 15, 2023 |
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Python |
2 |
A comprehensive quality-control and quantification RNA-seq pipeline |
Aug 22, 2022 |
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Python |
7 |
A comprehensive quality-control and quantification RNA-seq pipeline |
May 29, 2023 |
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Python |
2 |
A comprehensive quality-control and quantification RNA-seq pipeline |
Mar 22, 2024 |
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C++ |
62 |
A pipeline for analyzing DNA methylation data from bisulfite sequencing. |
Aug 10, 2022 |
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Python |
31 |
High throughput, pain-free big data pipelines. |
Jul 19, 2021 |
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Scala |
240 |
Tools for working with genomic and high throughput sequencing data. |
Aug 10, 2022 |
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|
Java |
241 |
A Java API for high-throughput sequencing data (HTS) formats. |
Aug 09, 2022 |
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Python |
7 |
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data |
Apr 17, 2023 |
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R |
13 |
comprehensive analysis of single-cell transcriptomics data |
Mar 24, 2023 |
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Perl |
8 |
High Throughput Biological Data Analysis using Perl |
Aug 29, 2021 |
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Common Workflow Language |
4 |
CWL toolkit for single-cell sequencing data analysis |
Jan 22, 2023 |
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|
HTML |
2 |
single-cell sequencing,TCR analysis,scRNA-sequencing |
Jan 22, 2024 |