|
HTML |
2 |
Nextflow pipeline for ChIP-seq data quality controls and analysis |
Apr 04, 2023 |
|
HTML |
6 |
A comprehensive analysis tool for Ribo-seq and small RNA-seq data |
May 02, 2022 |
|
Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
|
Python |
2 |
A comprehensive quality-control and quantification RNA-seq pipeline |
Aug 22, 2022 |
|
Python |
7 |
A comprehensive quality-control and quantification RNA-seq pipeline |
May 29, 2023 |
|
Python |
2 |
A comprehensive quality-control and quantification RNA-seq pipeline |
Mar 22, 2024 |
|
HTML |
2 |
Nextflow pipeline for ATAC-seq data analysis |
Feb 04, 2023 |
|
Shell |
8 |
Ribo-seq data analysis tool |
Sep 29, 2022 |
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Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
R |
4 |
A nextflow pipeline for performing bacterial RNA-Seq data analysis. |
Apr 17, 2023 |
|
Nextflow |
6 |
Quality control pipeline for RamDA-seq experiments. |
Dec 03, 2020 |
|
Python |
44 |
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data |
May 16, 2023 |
|
Groovy |
24 |
A Nextflow pipeline to identify quality control issues with new sequencing data. |
Apr 05, 2023 |
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HTML |
3 |
Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification) |
Dec 16, 2022 |
|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
|
Jupyter Notebook |
3 |
Strand-Seq Quality Control Pipeline based on ashleys-qc |
May 23, 2023 |
|
Groovy |
7 |
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm |
Jan 28, 2023 |
|
Python |
55 |
Analysis pipeline for ATAC-seq Data |
Apr 17, 2023 |
|
HTML |
10 |
An example RNA-seq pipeline with Nextflow and using public ENCODE data |
Feb 02, 2022 |
|
R |
6 |
Quality Control, Mapping and Reads Count for RNA-Seq Analysis |
Nov 22, 2022 |
|
HTML |
2 |
Nextflow pipeline for quality controls and trimming of raw sequencing data |
Mar 21, 2023 |
|
Python |
26 |
A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization. |
Jun 08, 2022 |
|
Python |
5 |
Pipeline for Analysis of ChIP-Seq data |
Jul 16, 2022 |
|
R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
|
R |
21 |
ATAC-seq Quality Control |
Feb 07, 2023 |
|
HCL |
5 |
Nextflow pipeline for nanocompore analysis |
May 04, 2023 |
|
Nextflow |
2 |
Illumina Analysis Pipeline in Nextflow |
Jul 25, 2023 |
|
HTML |
18 |
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data |
May 14, 2023 |
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R |
2 |
GRIP-seq analysis pipeline |
Jun 21, 2022 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
C++ |
36 |
BS-seq analysis pipeline |
Mar 16, 2023 |
|
R |
4 |
A tutorial to perform RNA-Seq data processing and analysis |
Apr 15, 2022 |
|
Groovy |
51 |
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure. |
Feb 08, 2023 |
|
Python |
2 |
Upstream ChIP-seq analysis pipeline for tRNA data |
Nov 27, 2014 |
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R |
3 |
web server of 4C-Seq data analysis pipeline |
Apr 13, 2023 |
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C++ |
10 |
ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples. |
Jun 24, 2022 |
|
Nextflow |
6 |
This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of … |
Apr 08, 2023 |
|
Nextflow |
4 |
A proof of concept RNA-Seq pipeline with Nextflow |
Dec 20, 2018 |
|
Nextflow |
34 |
A proof of concept RNA-Seq pipeline with Nextflow |
Mar 06, 2023 |
|
Groovy |
3 |
A Nextflow pipeline for single-cell RNA-Seq dataset |
Apr 21, 2024 |
|
R |
3 |
Quality control for patch-seq data using marker genes |
Dec 11, 2021 |
|
R |
16 |
a pipeline of metabolomics data processing and quality control |
Mar 01, 2023 |
|
Python |
20 |
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq). |
Apr 23, 2023 |
|
Nextflow |
4 |
Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells) |
Mar 16, 2023 |
|
R |
8 |
Riborex: Fast and flexible identification of differential translation from Ribo-seq data |
Apr 09, 2021 |
|
Nextflow |
2 |
A Nextflow pipeline for diffusion MRI quality check |
Oct 23, 2023 |
|
R |
2 |
Pipeline for 3'-seq analysis |
Jan 23, 2019 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |
|
HTML |
71 |
A simple RNA-Seq differential gene expression pipeline using Nextflow |
May 15, 2023 |
|
Python |
2 |
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets |
Jun 16, 2022 |