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Python |
10 |
Microbial Genome Circular plotting tool for comparative genomics using Circos |
Jun 30, 2022 |
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JavaScript |
5 |
Lightweight genome browser for microbial genomes |
Oct 20, 2023 |
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None |
2 |
Microbial Genome Circular plotting tool using Circos |
Oct 23, 2022 |
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|
Python |
17 |
annotation pipeline for microbial genomes and metagenomes |
Jun 06, 2020 |
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Perl |
4 |
Microbial annotation pipeline - in progress |
Jan 27, 2023 |
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Python |
25 |
Tool to estimate genome quality of microbial eukaryotes |
May 12, 2023 |
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Perl |
58 |
Genome Scripts used in fungal comparative genomics |
Jun 17, 2022 |
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Python |
46 |
SMETANA: a tool to analyse interactions in microbial communities |
May 06, 2023 |
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Scala |
9 |
A genomics pipeline build on top of the GATK Queue framework |
Dec 19, 2019 |
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Nextflow |
3 |
Quantify microbial abundance from whole-genome shotgun sequencing data |
Feb 15, 2023 |
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C++ |
2 |
Pairing reads on genome graphs |
Sep 01, 2020 |
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Python |
3 |
Python library to facilitate genome assembly, annotation, and comparative genomics |
Jun 19, 2022 |
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|
Python |
585 |
Python library to facilitate genome assembly, annotation, and comparative genomics |
Apr 30, 2023 |
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Python |
8 |
Whole Genome Annotation Pipeline |
Aug 13, 2022 |
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Python |
4 |
Genome Decomposition Analysis pipeline |
Jan 09, 2023 |
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Python |
3 |
Bacterial genome assembly pipeline |
Mar 02, 2022 |
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|
Python |
25 |
MGnify genome analysis pipeline |
Jun 16, 2022 |
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|
Python |
209 |
Eukaryotic Genome Annotation Pipeline |
Aug 16, 2022 |
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Perl |
7 |
Genome annotation pipeline v2 |
Oct 13, 2022 |
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Python |
89 |
Pipeline for metabolic annotation of microbial genomes |
May 12, 2023 |
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Python |
32 |
A genome visualization python package for comparative genomics |
Aug 08, 2022 |
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Python |
4 |
Data Pipeline for Shopee Analyse |
May 25, 2022 |
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C++ |
27 |
extract MSAs from genome variation graphs |
Dec 16, 2022 |
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Rust |
4 |
scale-space filtering on genome graphs |
Jan 18, 2022 |
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JavaScript |
3 |
An interactive, JavaScript-based browser for microbial pangenome graphs |
Dec 01, 2020 |
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Python |
2 |
Clinical Whole Genome Sequencing Pipeline |
May 12, 2022 |
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Shell |
5 |
SNVPhyl whole genome phylogenomics pipeline. |
Feb 13, 2023 |
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Common Workflow Language |
203 |
NCBI Prokaryotic Genome Annotation Pipeline |
Aug 19, 2022 |
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Python |
4 |
OGAP: Organelle Genome Annotation Pipeline |
Mar 01, 2023 |
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Shell |
7 |
Genome Analysis Pipeline for Lecture |
May 13, 2023 |
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Groovy |
19 |
BACTpipe: An assembly and annotation pipeline for bacterial genomics |
Dec 04, 2022 |
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C++ |
7 |
Sampling and manipulating genome-wide ancestral recombination graphs (ARGs) |
Jan 31, 2022 |
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Python |
105 |
Processing pipeline for pan-genome visulization and exploration |
Aug 19, 2022 |
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Shell |
14 |
Genome databases generation pipeline for ngs.plot and region_analysis. |
Mar 29, 2023 |
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Python |
17 |
A snakemake pipeline for 10X genomics cellranger |
Apr 20, 2023 |
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Python |
66 |
🔗Genome assembly scaffolder using minimizer graphs |
Jul 22, 2022 |
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JavaScript |
22 |
Visualization tool for (meta)genome assembly graphs |
Sep 25, 2022 |
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C++ |
912 |
tools for working with genome variation graphs |
May 01, 2023 |
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Perl |
4 |
DNANexus Whole Genome Bisulphite Analysis Pipeline |
Nov 15, 2018 |
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JavaScript |
7 |
GIAB pipeline for benchmarking genome assemblies |
Jun 13, 2022 |
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JavaScript |
23 |
KnetMiner - webapp to search and visualize genome-scale knowledge graphs |
Mar 09, 2023 |
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Python |
5 |
SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains … |
Feb 22, 2024 |
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HTML |
5 |
Pipeline to pull microbial reads from WGS data and perform metagenomic analysis |
May 08, 2023 |
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|
Python |
2 |
Pan-genome Construction and Population Structure Variation Calling pipeline |
Jun 26, 2022 |
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|
Groovy |
57 |
A scalable bacterial genome assembly, annotation and analysis pipeline |
Apr 30, 2023 |
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Python |
11 |
Trigger the Google Genomics Pipeline API with CWL |
Sep 29, 2017 |
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Shell |
2 |
A simple genomics "pipeline" implemented via shell scripts |
Jan 07, 2021 |
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C++ |
141 |
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs |
Apr 26, 2023 |
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R |
3 |
hogwild path-guided SGD layout of genome graphs |
Jan 24, 2023 |
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Shell |
3 |
Creates plant genome graphs for easy marker detection! |
Sep 30, 2018 |