|
Python |
38 |
Reference-guided multiple sequence alignment of viral genomes |
Jul 21, 2022 |
|
Python |
10 |
Align short reads against viral genomes in protein space |
Jan 31, 2022 |
|
Python |
6 |
ViralCC: leveraging metagenomic proximity-ligation to retrieve complete viral genomes |
Mar 01, 2023 |
|
Nextflow |
6 |
Detect iSNV and construct whole viral genomes from metagenomic samples |
Feb 27, 2024 |
|
None |
2 |
Niema's benchmarking experiment of Assembled Genomes Compressor (AGC) on viral data |
Mar 03, 2023 |
|
wdl |
3 |
Public health bioinformatics repository for WDL workflows to analyze viral genomes. |
Jan 28, 2023 |
|
Jupyter Notebook |
5 |
A computational pipeline to find Human Endogenous Retroviruses in RNA Seq Data |
May 28, 2020 |
|
HTML |
94 |
V-pipe is a pipeline designed for analysing NGS data of short viral genomes |
Oct 10, 2022 |
|
F* |
37 |
Bioinformatics tool to find integrons in bacterial genomes |
Aug 25, 2022 |
|
Python |
4 |
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes |
Oct 10, 2023 |
|
TypeScript |
2 |
An API service to find viral instagram posts of users |
Apr 28, 2023 |
|
Python |
5 |
Find CRISPRS in genomes using pilercr & draws a matrix |
Feb 28, 2019 |
|
HTML |
2 |
Minimal way to find and download complete prokaryotic genomes |
Feb 13, 2023 |
|
Python |
6 |
Discovery of Novel Endogenous Viruses |
Feb 08, 2019 |
|
Shell |
3 |
Endogenous Retrovirus Response to Cancer |
Jul 12, 2022 |
|
Python |
6 |
viral-ngs |
Jan 28, 2023 |
|
PHP |
54 |
Find Unused Public Elements in Your Code |
Apr 26, 2023 |
|
R |
3 |
Competing endogenous RNA (ceRNA) network inference tool |
Sep 23, 2021 |
|
Python |
118 |
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function … |
Jun 08, 2022 |
|
Python |
28 |
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and … |
Apr 21, 2023 |
|
Shell |
2 |
Pipeline to characterize Human Endogenous Retrovirus (HERV) expression |
Nov 19, 2021 |
|
Jupyter Notebook |
15 |
MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes |
May 06, 2023 |
|
CSS |
2 |
Calculate Viral Coefficient |
Jan 01, 2016 |
|
Java |
12 |
Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction). |
Sep 09, 2022 |
|
Python |
10 |
Viral Identification and Discovery - A viral characterization pipeline built in Nextflow. |
Apr 24, 2023 |
|
Python |
4 |
simple viral variant caller |
Jun 16, 2021 |
|
wdl |
41 |
viral-ngs: complete pipelines |
Jul 11, 2022 |
|
Python |
169 |
Viral genomics analysis pipelines |
Aug 05, 2022 |
|
Python |
2 |
ViReaDB: Viral Read Database |
Jun 05, 2023 |
|
Shell |
2 |
Human Viral Reconstruction Survey |
Apr 30, 2024 |
|
Python |
2 |
viral KMER enrichment - Used to enrich viral reads in an input dataset |
Feb 19, 2021 |
|
TypeScript |
171 |
🔍 Find elements in Playwright with queries from Testing Library |
Aug 11, 2022 |
|
JavaScript |
7 |
Find all free elements from itch.io due to 100% discounts |
Apr 27, 2023 |
|
Perl |
74 |
Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation |
Aug 01, 2022 |
|
Python |
18 |
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving … |
Sep 21, 2023 |
|
None |
10 |
🧬 Viral genome reference alignment |
Feb 23, 2021 |
|
Jupyter Notebook |
2 |
computational extraction of viral epitopes |
Mar 26, 2022 |
|
Python |
113 |
Language modeling of viral evolution |
Apr 07, 2023 |
|
Shell |
2 |
Detecting recombination of viral lineages |
Jun 16, 2022 |
|
Python |
3 |
bvas: bayesian viral allele selection |
Jun 13, 2022 |
|
Nextflow |
2 |
Nextflow tools for viral metagenomics |
May 07, 2021 |
|
Python |
50 |
viralVerify: viral contig verification tool |
Mar 28, 2023 |
|
Ruby |
2 |
A viral loop for programmers. |
Jan 28, 2023 |
|
PHP |
3 |
Drupal powered viral fundraising platform. |
Nov 09, 2018 |
|
Python |
4 |
Viral genome assemble and characterisation |
Apr 14, 2023 |
|
C++ |
7 |
Fast viral consensus genome reconstruction |
May 17, 2023 |
|
Swift |
27 |
Tweak UI elements at run time to find the perfect values |
Jan 29, 2022 |
|
Python |
5 |
Layout analysis to find layout elements in documents (similar to P2PaLA) |
May 04, 2023 |
|
None |
2 |
Layout analysis to find layout elements in documents (similar to P2PaLA) |
Jun 15, 2023 |
|
Ruby |
25 |
MiGA: Microbial Genomes Atlas |
Sep 19, 2022 |