Stars
18
Forks
2
Language
C++
Last Updated
Apr 17, 2024
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Shell | 2 | Human Viral Reconstruction Survey | Apr 30, 2024 | |
| None | 10 | 🧬 Viral genome reference alignment | Feb 23, 2021 | |
| Python | 4 | Viral genome assemble and characterisation | Apr 14, 2023 | |
| Python | 5 | viral-ngs: genome assembly and scaffolding | Mar 23, 2021 | |
| Java | 12 | Probabilistic inference of viral quasispecies subject to recombination (viral haplotype reconstruction). | Sep 09, 2022 | |
| Jupyter Notebook | 2 | Viral DNA Genome Classification with Deep Learning | Jun 01, 2021 | |
| Python | 9 | Reconstruction of ancestral genome maps | Apr 24, 2023 | |
| Python | 2 | ViroConstrictor is a pipeline designed to process raw FastQ data from viral amplicon-based sequencing and … | Apr 12, 2022 | |
| Rust | 13 | Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood: | Jul 20, 2022 | |
| Shell | 2 | Viral genome assembly pipeline for WGS using ONT | Jan 27, 2023 | |
| Python | 3 | A viral haplotype reconstruction tool for long reads. | Jun 20, 2022 | |
| Python | 105 | CarveMe: genome-scale metabolic model reconstruction | May 06, 2023 | |
| Python | 7 | CoVarPlot - Covarage Variant Plots for viral whole genome sequencing | May 06, 2022 | |
| Python | 58 | Coding Genome Reconstruction using Iso-Seq data | Apr 24, 2023 | |
| Python | 3 | viral haplotyps reconstruction from long reads via Deep Matrix Factorization | Nov 30, 2022 | |
| Python | 3 | An elastically-scaling automated AWS pipeline for viral consensus sequence generation | Feb 08, 2022 | |
| Go | 17 | Fast Probabilistic Consensus Simulator | Dec 12, 2021 | |
| None | 2 | Consensus peaks of chromatin accessibility in the human genome | May 30, 2023 | |
| None | 4 | Fast whole genome phylogeny | Jan 22, 2021 | |
| TypeScript | 138 | Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement | Aug 19, 2022 | |
| Python | 2 | A pipeline for simulating viral or vector integration into a host genome | Feb 26, 2024 | |
| Python | 5 | Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models | May 19, 2023 | |
| Python | 3 | Snakemake pipeline to assemble a viral consensus sequence, and call iSNVs and haplotypes | Dec 06, 2022 | |
| Nextflow | 2 | SARS-CoV-2 genome reconstruction for Illumina data in Nextflow | Sep 26, 2023 | |
| Jupyter Notebook | 3 | Data and scripts for the paper "Fast automated reconstruction of genome-scale metabolic models for microbial … | Feb 06, 2023 | |
| C++ | 282 | Fast Whole-Genome Similarity (ANI) Estimation | May 21, 2023 | |
| JavaScript | 272 | Fast, flexible and extensible genome browser. | May 14, 2023 | |
| MATLAB | 75 | The RAVEN Toolbox for genome scale model reconstruction, curation and analysis. | Apr 12, 2023 | |
| Python | 59 | A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies | Jan 25, 2023 | |
| Jupyter Notebook | 95 | Peregrine: Fast Genome Assembler Using SHIMMER Index | Jul 06, 2022 | |
| C++ | 157 | Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads | May 31, 2023 | |
| Python | 9 | Fast code for parallel beam tomographic reconstruction | Aug 17, 2022 | |
| Python | 17 | Fast reconstruction of spatial networks from bioimages. | Jun 08, 2022 | |
| CSS | 22 | InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic … | Apr 28, 2022 | |
| C++ | 54 | ✏️ultra fast and scalable genome assembly polishing | May 23, 2022 | |
| Python | 395 | Fast genome-wide functional annotation through orthology assignment | Oct 17, 2022 | |
| C++ | 321 | Fast genome and metagenome distance estimation using MinHash | Oct 11, 2022 | |
| C++ | 98 | Fast HLA type inference from whole-genome data | May 04, 2023 | |
| Perl | 83 | An accurate and ultra-fast hybrid genome assembler | Mar 28, 2023 | |
| C++ | 9 | A fast surface reconstruction method from Hermite points | May 03, 2022 | |
| None | 2 | Fast 3D biomolecular shape reconstruction from cryoEM data | Oct 26, 2022 | |
| C | 3 | Fast, parallel meta k-means algorithm using iterative consensus. | Jun 29, 2021 | |
| Python | 6 | viral-ngs | Jan 28, 2023 | |
| Python | 2 | SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries | Mar 13, 2022 | |
| Go | 110 | Accurate metagenomic profiling && Fast large-scale sequence/genome searching | Sep 28, 2022 | |
| Python | 145 | SparseNeuS: Fast Generalizable Neural Surface Reconstruction from Sparse views | Oct 05, 2022 | |
| Python | 832 | Direct voxel grid optimization for fast radiance field reconstruction. | May 01, 2023 | |
| Cython | 9 | VGsim is a fast and scalable simulator of viral genealogies during global pandemic. | Apr 07, 2023 | |
| CSS | 2 | Calculate Viral Coefficient | Jan 01, 2016 | |
| Python | 319 | Tools for fast and flexible genome assembly scaffolding and improvement | Apr 25, 2023 |