Stars
2
Forks
0
Language
Python
Last Updated
Jan 23, 2023
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
Python | 5 | Statistical phasing software for long read data | Jan 24, 2022 | |
Python | 60 | Variant calling tool for long-read sequencing data | May 02, 2023 | |
HTML | 2 | Long-Read Sequencing Workshop | Sep 21, 2020 | |
Rust | 24 | flopp is a software package for single individual haplotype phasing of polyploid organisms from long … | Jan 09, 2023 | |
Python | 5 | A pipeline for long-read sequencing data. | Jun 09, 2019 | |
Python | 300 | Plotting scripts for long read sequencing data | May 14, 2023 | |
Python | 31 | A tool for evaluate long-read de novo assembly results | Mar 29, 2023 | |
HTML | 3 | Metagenomic classification of long-read sequencing data | Jul 22, 2022 | |
Python | 159 | Filtering and trimming of long read sequencing data | May 10, 2023 | |
Python | 11 | Phasing for metagenomics using PacBio long reads | Jun 09, 2022 | |
Python | 4 | ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data | May 25, 2022 | |
Python | 19 | Structural variant caller for low-depth long-read sequencing data | Feb 13, 2023 | |
Python | 30 | NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data | Dec 08, 2022 | |
Python | 7 | A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data | Sep 20, 2022 | |
Jupyter Notebook | 3 | tool for long read transcriptome assembly | Aug 21, 2023 | |
JavaScript | 47 | A catalogue of available long read sequencing data analysis tools | May 05, 2022 | |
Jupyter Notebook | 10 | IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis. | Feb 15, 2023 | |
Python | 89 | a short-read polishing tool for long-read assemblies | Apr 05, 2023 | |
Python | 15 | NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection) | May 21, 2022 | |
Python | 39 | Reference-free clustering and consensus forming of long-read amplicon sequencing | Apr 27, 2023 | |
Nextflow | 2 | Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data | Jan 17, 2024 | |
C | 16 | A computational algorithm and software tool for fast and accurate detection of gene fusion by … | Feb 03, 2023 | |
C | 25 | Hardware Acceleration of Long Read Pairwise Overlapping in Genome Sequencing: Open Source Repository | Feb 24, 2023 | |
C++ | 43 | Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing | Apr 29, 2023 | |
Groovy | 91 | A read extraction and realignment tool for next generation sequencing data | Apr 17, 2023 | |
Python | 2 | A tool for classifiying short-read sequencing data from xenograft samples. | Apr 14, 2022 | |
C++ | 8 | An open-source pipeline for benchmarking DNA long read correction algorithms for third generation sequencing technology | Jul 30, 2021 | |
Python | 26 | TELR is a fast non-reference transposable element detector from long read sequencing data. | Mar 12, 2023 | |
C++ | 85 | Short-read sequencing tools | Jul 20, 2022 | |
Java | 20 | Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing | Mar 23, 2023 | |
HTML | 123 | Tool for the Quality Control of Long-Read Defined Transcriptomes | Apr 30, 2023 | |
Python | 3 | Reference-Aware Long Amplicon Analysis for SMRT Sequencing | May 12, 2020 | |
Java | 11 | A comprehensive and intelligent clinical phasing tool | Mar 03, 2022 | |
Python | 239 | A tool for generating consensus long-read assemblies for bacterial genomes | Apr 24, 2023 | |
Jupyter Notebook | 8 | A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers | Apr 15, 2024 | |
HTML | 4 | This is a compilation of the scripts I used for genome assembly using long read … | Aug 21, 2022 | |
Perl | 14 | MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) | Mar 01, 2023 | |
Python | 3 | Genome assembly gap long read support and reassembly tool | Sep 23, 2022 | |
Perl | 3 | Collection of code for checking NSG sequencing results | Jul 17, 2021 | |
C++ | 177 | Read-based phasing of genomic variants, also called haplotype assembly | Oct 11, 2022 | |
C++ | 100 | Long read aligner | Aug 17, 2022 | |
Python | 5 | closing gaps in long read assemblies by long read walking | Mar 11, 2023 | |
R | 6 | Coverage / read count calculator for sequencing experiments | Jan 27, 2021 | |
Python | 92 | Read Until client library for Nanopore Sequencing | Apr 04, 2023 | |
None | 10 | Small and structural variant phasing tool for PacBio HiFi reads | Apr 27, 2023 | |
C++ | 16 | Tool for globally phasing diploid assembly graphs with orthogonal data | Apr 27, 2023 | |
Python | 2 | Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements | Aug 11, 2022 | |
Perl | 4 | Nano2NGS: A framework for converting long-read sequencing data into NGS-liked mode for targeted mutation and … | May 04, 2023 | |
Python | 11 | A single cell sequencing read simulator. | Mar 27, 2023 | |
wdl | 90 | A structural variation pipeline for short-read sequencing | Jul 25, 2022 |