Stars
6
Forks
1
Language
Python
Last Updated
Oct 23, 2023
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
Nextflow | 2 | Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data | Jan 17, 2024 | |
Jupyter Notebook | 8 | A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers | Apr 15, 2024 | |
Python | 121 | a signal-level demultiplexer for Oxford Nanopore reads | Mar 08, 2023 | |
Python | 4 | Consensus calling for Amplicon Nanopore Sequencing | Apr 17, 2023 | |
Python | 2 | Plotting functions of Oxford Nanopore sequencing data | Feb 24, 2024 | |
None | 8 | Helpful scripts for working with Oxford Nanopore Sequencing data | Dec 08, 2020 | |
Go | 2 | Automated data mangement for Oxford Nanopore DNA sequencing instruments | Apr 30, 2024 | |
Python | 15 | NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection) | May 21, 2022 | |
Python | 5 | Oxford nanopore transcriptome read simulator | Jul 15, 2019 | |
Python | 39 | Reference-free clustering and consensus forming of long-read amplicon sequencing | Apr 27, 2023 | |
Python | 107 | Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data | Jan 28, 2023 | |
Python | 10 | Functions to extract information from Oxford Nanopore sequencing data and alignments | Aug 31, 2022 | |
Python | 4 | An awesome Oxford Nanopore Pipeline for direct RNA-sequencing | May 23, 2023 | |
Python | 4 | Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … | Apr 06, 2023 | |
Python | 30 | NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data | Dec 08, 2022 | |
Python | 3 | Reference-Aware Long Amplicon Analysis for SMRT Sequencing | May 12, 2020 | |
Python | 5 | A pipeline for long-read sequencing data. | Jun 09, 2019 | |
Python | 300 | Plotting scripts for long read sequencing data | May 14, 2023 | |
Shell | 2 | A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data. | Mar 29, 2024 | |
Python | 92 | Read Until client library for Nanopore Sequencing | Apr 04, 2023 | |
Python | 60 | Variant calling tool for long-read sequencing data | May 02, 2023 | |
C++ | 43 | Reference-free reconstruction and error correction of transcriptomes from Nanopore long-read sequencing | Apr 29, 2023 | |
HTML | 3 | Metagenomic classification of long-read sequencing data | Jul 22, 2022 | |
HTML | 2 | Long-Read Sequencing Workshop | Sep 21, 2020 | |
Java | 7 | Analysis tool for Nanopore sequencing data | Oct 21, 2022 | |
Nextflow | 5 | Basic workflow for nanopore sequencing data | Apr 24, 2023 | |
Java | 31 | Analysis tool for Nanopore sequencing data | Oct 18, 2021 | |
Python | 8 | NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data | May 02, 2023 | |
Python | 159 | Filtering and trimming of long read sequencing data | May 10, 2023 | |
Python | 68 | Create statistic summary of an Oxford Nanopore read dataset | Apr 21, 2023 | |
Python | 51 | Quality control tools for nanopore sequencing data | May 15, 2023 | |
Python | 4 | ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data | May 25, 2022 | |
Python | 19 | Structural variant caller for low-depth long-read sequencing data | Feb 13, 2023 | |
R | 5 | Best practices for the Analysis of Oxford Nanopore Direct RNA sequencing Data (Begik*, Lucas*, et … | Apr 26, 2023 | |
C | 45 | Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads. | May 24, 2023 | |
C++ | 249 | adapter trimmer for Oxford Nanopore reads | Apr 23, 2023 | |
JavaScript | 47 | A catalogue of available long read sequencing data analysis tools | May 05, 2022 | |
Python | 9 | creating reference databases for amplicon sequencing | Apr 18, 2023 | |
Python | 2 | A tool for phasing long-read sequencing results. | Jan 23, 2023 | |
Python | 6 | Single cell Nanopore sequencing data for Genotype and Phenotype | May 10, 2023 | |
Python | 2 | A PyTorch Basecaller for Oxford Nanopore Reads | May 06, 2022 | |
Python | 331 | A PyTorch Basecaller for Oxford Nanopore Reads | Apr 27, 2023 | |
C++ | 145 | A LibTorch Basecaller for Oxford Nanopore Reads | Apr 27, 2023 | |
C | 96 | Flip-flop basecaller for Oxford Nanopore reads | Jan 28, 2023 | |
Python | 108 | Training models for basecalling Oxford Nanopore reads | Jan 28, 2023 | |
C++ | 7 | A LibTorch Basecaller for Oxford Nanopore Reads | Feb 21, 2023 | |
Python | 115 | A basecaller for Oxford Nanopore Technologies' sequencers | Apr 11, 2023 | |
Python | 7 | Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data | Feb 27, 2023 | |
Shell | 2 | Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data | Feb 18, 2022 | |
Shell | 2 | Influenza A Full-Length Consensus Calling for Nanopore Sequencing Data | Apr 12, 2023 |