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R |
2 |
Neighbor-seq infers direct cell-cell interaction network in tissues from scRNA-seq data. |
Mar 24, 2023 |
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Jupyter Notebook |
2 |
Single cell RNA-seq of human melanocytes |
Sep 23, 2021 |
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Python |
4 |
Cell cycle classifier for scRNA-seq data. |
Feb 25, 2022 |
|
R |
19 |
Cell-cell communication and lineage inference for scRNA-seq data |
Mar 24, 2022 |
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Python |
3 |
Python library to perform memory efficient cross-sample cell mapping using single cell transciptomics (scRNA-Seq) data |
Mar 16, 2021 |
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Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |
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Jupyter Notebook |
2 |
Analysis of single-cell single-embryo RNA seq data from the zebrafish developmental atlas Zebrahub. |
Dec 11, 2023 |
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Jupyter Notebook |
4 |
Single cell ATAC-Seq preprocessing for single cell explorer |
May 29, 2021 |
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C++ |
2 |
Cell-to-cell communication with enriched pathways project, using scRNA-seq data |
Sep 26, 2023 |
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HTML |
4 |
Deep learning tackles single-cell analysis - A survey of deep learning for scRNA-seq analysis |
May 15, 2022 |
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R |
18 |
gene regulatory network reconstruction from scRNA-Seq |
May 09, 2023 |
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HTML |
2 |
single-cell sequencing,TCR analysis,scRNA-sequencing |
Jan 22, 2024 |
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Python |
9 |
7th place solution of Human Protein Atlas - Single Cell Classification on Kaggle |
Jan 26, 2023 |
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Python |
11 |
Human Protein Atlas - Single Cell Classification 2nd place solution Dual Head pipeline |
Jun 26, 2022 |
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Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
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Shell |
2 |
Single Cell RNA-Seq Imputation |
Mar 31, 2021 |
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Python |
2 |
Single cell RNA-seq tools |
Jul 20, 2022 |
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Python |
4 |
single-cell RNA-seq clustering |
Jul 27, 2021 |
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R |
2 |
An experimental R package for inferring cell-cell networks from scRNA-seq data. |
Oct 19, 2022 |
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R |
47 |
scPred package for cell type prediction from scRNA-seq data |
Mar 05, 2023 |
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Perl |
2 |
mapping somatic variants to cell barcodes in scRNA-Seq data |
Sep 03, 2022 |
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Python |
7 |
Gene Set Scoring on the Nearest Neighbor Graph (gssnng) for Single Cell RNA-seq (scRNA-seq) using … |
Apr 07, 2023 |
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TeX |
4 |
The Human Cell Atlas Jamboree task 1 and 3. Identifying cells from single-cell RNA-seq droplet … |
Sep 23, 2019 |
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R |
7 |
R/Bioconductor-based access to single-cell genomics data generated by the Human Cell Atlas Project. |
May 23, 2022 |
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R |
2 |
A network-based approach to using single cell RNA-seq for comparing cell types |
Dec 20, 2019 |
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R |
8 |
Browse the Human Cell Atlas data portal |
Aug 08, 2022 |
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R |
2 |
Human Cell Atlas data discovery and retrieval |
Feb 07, 2024 |
|
R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
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Jupyter Notebook |
68 |
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate … |
Apr 20, 2023 |
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Java |
3 |
Single Cell Expression Atlas web application |
Aug 07, 2022 |
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Python |
5 |
Single cell ATAC-Seq Snakemake pipeline |
Sep 25, 2021 |
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HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
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R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
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Rust |
41 |
Single-Cell RNA-seq pseudo-aligner |
Mar 22, 2023 |
|
R |
22 |
Single cell RNA-seq analysis bundle |
Mar 28, 2023 |
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R |
4 |
Accurate, deep, fast, and fully-automated scRNA-seq cell-type annotation |
Mar 30, 2023 |
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Jupyter Notebook |
6 |
scGNN: scRNA-seq Dropout Imputation via Induced Hierarchical Cell Similarity Graph |
Feb 27, 2023 |
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R |
24 |
netSmooth: A Network smoothing based method for Single Cell RNA-seq imputation |
Jul 04, 2022 |
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Jupyter Notebook |
9 |
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA … |
Apr 07, 2023 |
|
R |
8 |
Core utilities for single-cell RNA-seq |
Dec 12, 2021 |
|
R |
342 |
Inferring CNV from Single-Cell RNA-Seq |
Aug 10, 2022 |
|
R |
2 |
Adaptive Visualization for Single-cell RNA-seq |
Apr 07, 2023 |
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Jupyter Notebook |
63 |
Preprocessing of single-cell RNA-Seq (deprecated) |
Apr 08, 2022 |
|
Jupyter Notebook |
140 |
Benchmarking computational single cell ATAC-seq methods |
Aug 11, 2022 |
|
HTML |
19 |
HSCI/Catalyst Single-cell RNA-Seq Workshop |
Aug 29, 2022 |
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Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
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R |
2 |
Analysis Pipeline for Single Cell ATAC-seq |
Jul 30, 2022 |
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R |
2 |
single cell RNA-seq results report system |
Aug 08, 2023 |
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Python |
4 |
a python toolkit for single-cell tumor phylogenetic analysis |
Nov 06, 2022 |
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HTML |
2 |
Front end components of Expression Atlas and Single Cell Expression Atlas |
Feb 14, 2023 |