Stars
2
Forks
0
Language
R
Last Updated
Jul 30, 2022
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Python | 5 | Single cell ATAC-Seq Snakemake pipeline | Sep 25, 2021 | |
| Nextflow | 9 | Sanger Cellular Genetics single-cell ATAC-seq pipeline. | Mar 28, 2023 | |
| Jupyter Notebook | 4 | Single cell ATAC-Seq preprocessing for single cell explorer | May 29, 2021 | |
| Python | 2 | Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data | Oct 10, 2019 | |
| Python | 55 | Analysis pipeline for ATAC-seq Data | Apr 17, 2023 | |
| HTML | 16 | Python package for analysis of multiomic single cell RNA-seq and ATAC-seq. | Apr 25, 2022 | |
| R | 3 | Analysis of single-cell ATAC-seq data using topic models. | Apr 06, 2023 | |
| Jupyter Notebook | 140 | Benchmarking computational single cell ATAC-seq methods | Aug 11, 2022 | |
| HTML | 2 | Nextflow pipeline for ATAC-seq data analysis | Feb 04, 2023 | |
| None | 13 | List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. | Dec 01, 2022 | |
| None | 3 | List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. | Jun 17, 2017 | |
| None | 4 | List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. | Oct 28, 2018 | |
| R | 7 | Single cell RNA-seq and ATAC seq analysis of cardiac progenitor cell transition states and lineage … | Oct 08, 2021 | |
| Python | 4 | An interactive browser for single-cell ATAC-seq data | Feb 10, 2022 | |
| Python | 2 | 4DN ATAC-seq pipeline, inherited from ENCODE ATAC-seq pipeline | Oct 31, 2022 | |
| Python | 7 | Single Cell RNA-seq Pipeline | May 18, 2022 | |
| R | 4 | A/B compartments from single-cell ATAC seq (scATAC) | Aug 17, 2018 | |
| R | 4 | A single-cell ATAC-seq simulation framework (R package) | Jan 04, 2023 | |
| Python | 270 | ENCODE ATAC-seq pipeline | Aug 16, 2022 | |
| Python | 64 | ATAC-seq snakemake pipeline | Oct 19, 2022 | |
| Python | 2 | BSF ATAC-seq pipeline | Dec 22, 2021 | |
| R | 3 | A single-cell RNA-seq pipeline | Apr 20, 2023 | |
| Nextflow | 114 | ATAC-seq peak-calling, QC and differential analysis pipeline | Aug 15, 2022 | |
| Python | 154 | ATAC-seq and DNase-seq processing pipeline | Apr 21, 2023 | |
| C++ | 72 | Pipeline for initial analysis of droplet-based single-cell RNA-seq data | Jul 07, 2022 | |
| Python | 7 | Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- … | Mar 20, 2023 | |
| HTML | 18 | scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data | May 14, 2023 | |
| R | 9 | Repository for CCBR single cell RNA-Seq pipeline | Jun 16, 2022 | |
| R | 22 | Single cell RNA-seq analysis bundle | Mar 28, 2023 | |
| HTML | 2 | Test data for ENCODE atac-seq-pipeline | Dec 04, 2019 | |
| Nextflow | 17 | Pipeline for Universal Mapping of ATAC-seq | Aug 21, 2023 | |
| Groovy | 3 | A Nextflow pipeline for single-cell RNA-Seq dataset | Apr 21, 2024 | |
| Python | 5 | Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline | Mar 31, 2023 | |
| Python | 4 | Single Cell RNA-Seq analysis toolbox for Python | Sep 13, 2018 | |
| Java | 19 | ASAP : Automated Single-cell Analysis Pipeline | Jan 27, 2023 | |
| Shell | 2 | cwl implementation of the ATAC-seq pipeline | Feb 04, 2020 | |
| Python | 2 | Some scripts for ATAC-seq data analysis | Dec 08, 2016 | |
| R | 23 | Single cell RNA-seq analysis for transcriptomic type characterization | May 31, 2022 | |
| Python | 155 | Differential expression analysis for single-cell RNA-seq data. | Apr 06, 2023 | |
| None | 2 | Differential expression analysis for single-cell RNA-seq data | Apr 14, 2021 | |
| R | 9 | Differential expression analysis for single-cell RNA-seq data | Nov 15, 2022 | |
| R | 114 | Signature Analysis and Visualization for Single-Cell RNA-seq | Apr 18, 2023 | |
| R | 30 | R package for bcbio single-cell RNA-seq analysis. | Apr 22, 2023 | |
| None | 3 | Analysis code for lungfish single cell RNA-seq data | Sep 22, 2023 | |
| None | 37 | Links to ATAC-seq analysis tools | Jan 18, 2023 | |
| None | 2506 | Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. | May 12, 2023 | |
| Python | 3 | Single Cell RNA-seq Analysis by Topic Modeling | May 24, 2022 | |
| Python | 4 | Single-cell RNA-seq data analysis and visualization | Jun 12, 2022 | |
| TeX | 2 | Analysis of single cell RNA-seq data course | Sep 25, 2019 | |
| TeX | 49 | Analysis of single cell RNA-seq data course | Apr 23, 2023 |