|
Python |
2 |
ChIP-seq analysis notes from Tommy Tang |
May 30, 2020 |
|
Python |
598 |
ChIP-seq analysis notes from Ming Tang |
Oct 14, 2022 |
|
Python |
708 |
RNAseq analysis notes from Ming Tang |
Oct 16, 2022 |
|
None |
392 |
scRNAseq analysis notes from Ming Tang |
Oct 19, 2022 |
|
None |
2 |
RNAseq analysis notes from Ming Tang |
Mar 10, 2023 |
|
None |
64 |
DNA methylation analysis notes from Ming Tang |
Oct 04, 2022 |
|
Shell |
125 |
DNA sequencing analysis notes from Ming Tang |
Oct 11, 2022 |
|
C++ |
2 |
ChIP-seq motif analysis |
Sep 20, 2023 |
|
None |
11 |
Notes on ChIP-seq and other-seq-related tools |
Jul 20, 2022 |
|
Perl |
4 |
Computational pipeline of ENCODE ChIP-seq analysis |
Oct 19, 2021 |
|
Python |
5 |
Pipeline for Analysis of ChIP-Seq data |
Jul 16, 2022 |
|
Cython |
618 |
MACS -- Model-based Analysis of ChIP-Seq |
May 09, 2023 |
|
Python |
4 |
MACS -- Model-based Analysis of ChIP-Seq |
Mar 23, 2023 |
|
None |
2 |
MACS -- Model-based Analysis of ChIP-Seq |
Dec 05, 2023 |
|
R |
18 |
Analysis of single-cell ChIP-seq datasets : From count matrices to differential analysis |
Jan 23, 2023 |
|
Python |
2 |
Upstream ChIP-seq analysis pipeline for tRNA data |
Nov 27, 2014 |
|
Python |
3 |
Analysis tool for Spike-in ChIP-seq data |
Apr 07, 2023 |
|
Perl |
32 |
Differential analysis for ChIP-seq with biological replicates |
Apr 30, 2023 |
|
C++ |
10 |
ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples. |
Jun 24, 2022 |
|
Nextflow |
121 |
ChIP-seq peak-calling, QC and differential analysis pipeline. |
Aug 22, 2022 |
|
Python |
19 |
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis |
Apr 10, 2023 |
|
HTML |
2 |
Nextflow pipeline for ChIP-seq data quality controls and analysis |
Apr 04, 2023 |
|
SCSS |
2 |
An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN … |
Jun 26, 2023 |
|
HTML |
2 |
script for RNA-seq and Chip-seq |
Apr 17, 2021 |
|
None |
2 |
Simplified ChIP-exo and ChIP-seq assays |
Aug 26, 2022 |
|
Python |
183 |
ENCODE ChIP-seq pipeline |
Aug 11, 2022 |
|
R |
6 |
ChIP-seq Intersample Normalization |
Aug 05, 2022 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
Java |
2 |
AQUAS TF ChIP-seq pipeline |
Jan 19, 2022 |
|
Python |
3 |
cell-free ChIP-seq pipeline |
Nov 28, 2022 |
|
Python |
4 |
Benchmarking ChIP-seq peak callers |
Jan 19, 2023 |
|
Python |
2 |
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data |
Nov 01, 2013 |
|
Python |
83 |
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data |
Mar 07, 2023 |
|
Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |
|
None |
8 |
Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer |
Jan 27, 2020 |
|
C++ |
34 |
SPP - R package for analysis of ChIP-seq and other functional sequencing data |
Apr 01, 2023 |
|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
|
Python |
2 |
Technical ChIP-Seq pipeline on snakemake |
Jan 24, 2023 |
|
Shell |
3 |
Scripts to analyze ChIP-seq data |
Apr 04, 2022 |
|
HTML |
10 |
Self-guided educational workshop for ChIP-Seq and RNA-Seq |
Sep 19, 2022 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Shell |
5 |
Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...) |
Jan 31, 2023 |
|
R |
16 |
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set |
May 28, 2020 |
|
Java |
102 |
AQUAS TF and histone ChIP-seq pipeline |
Mar 13, 2023 |
|
Python |
106 |
ENCODE Uniform processing pipeline for ChIP-seq |
Jun 08, 2022 |
|
Python |
2 |
ENCODE Uniform processing pipeline for ChIP-seq |
Sep 07, 2022 |
|
C++ |
21 |
MUltiScale enrIchment Calling for ChIP-Seq Datasets |
Sep 07, 2022 |
|
C |
6 |
A software tool to identify dispersed epigenetic regions from ChIP-seq data |
Jun 08, 2022 |
|
C |
4 |
Package for including repetitive regions in peak calling from ChIP-seq datasets |
Mar 29, 2023 |
|
R |
18 |
RNA-seq analysis |
Sep 21, 2022 |