|
HTML |
2 |
Nextflow pipeline for ChIP-seq data quality controls and analysis |
Apr 04, 2023 |
|
Python |
26 |
A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization. |
Jun 08, 2022 |
|
R |
6 |
ChIP-seq Intersample Normalization |
Aug 05, 2022 |
|
Perl |
4 |
Computational pipeline of ENCODE ChIP-seq analysis |
Oct 19, 2021 |
|
Python |
5 |
Pipeline for Analysis of ChIP-Seq data |
Jul 16, 2022 |
|
Python |
2 |
Upstream ChIP-seq analysis pipeline for tRNA data |
Nov 27, 2014 |
|
Python |
183 |
ENCODE ChIP-seq pipeline |
Aug 11, 2022 |
|
Nextflow |
121 |
ChIP-seq peak-calling, QC and differential analysis pipeline. |
Aug 22, 2022 |
|
Java |
2 |
AQUAS TF ChIP-seq pipeline |
Jan 19, 2022 |
|
Python |
3 |
cell-free ChIP-seq pipeline |
Nov 28, 2022 |
|
C++ |
2 |
ChIP-seq motif analysis |
Sep 20, 2023 |
|
Python |
3 |
Analysis tool for Spike-in ChIP-seq data |
Apr 07, 2023 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
|
Python |
2 |
Technical ChIP-Seq pipeline on snakemake |
Jan 24, 2023 |
|
Java |
102 |
AQUAS TF and histone ChIP-seq pipeline |
Mar 13, 2023 |
|
Python |
106 |
ENCODE Uniform processing pipeline for ChIP-seq |
Jun 08, 2022 |
|
Python |
2 |
ENCODE Uniform processing pipeline for ChIP-seq |
Sep 07, 2022 |
|
R |
2 |
GRIP-seq analysis pipeline |
Jun 21, 2022 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
C++ |
36 |
BS-seq analysis pipeline |
Mar 16, 2023 |
|
HTML |
2 |
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files. |
Jan 05, 2023 |
|
None |
8 |
Integrated analysis and visualization of ChIP-seq data using ChIPpeakAnno, GeneNetworkBuilder and TrackViewer |
Jan 27, 2020 |
|
Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |
|
R |
2 |
Pipeline for 3'-seq analysis |
Jan 23, 2019 |
|
Python |
598 |
ChIP-seq analysis notes from Ming Tang |
Oct 14, 2022 |
|
Cython |
618 |
MACS -- Model-based Analysis of ChIP-Seq |
May 09, 2023 |
|
Python |
4 |
MACS -- Model-based Analysis of ChIP-Seq |
Mar 23, 2023 |
|
Python |
19 |
ChIP-seq analysis notes from Tommy Tang |
May 03, 2022 |
|
Python |
2 |
ChIP-seq analysis notes from Tommy Tang |
May 30, 2020 |
|
None |
2 |
MACS -- Model-based Analysis of ChIP-Seq |
Dec 05, 2023 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Nextflow |
6 |
Quality control pipeline for RamDA-seq experiments. |
Dec 03, 2020 |
|
Groovy |
7 |
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm |
Jan 28, 2023 |
|
Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
Python |
55 |
Analysis pipeline for ATAC-seq Data |
Apr 17, 2023 |
|
Jupyter Notebook |
10 |
The analysis pipeline for FLEP-seq |
Apr 17, 2023 |
|
Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
|
Perl |
32 |
Differential analysis for ChIP-seq with biological replicates |
Apr 30, 2023 |
|
R |
3 |
A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control. |
Mar 13, 2024 |
|
Python |
20 |
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq). |
Apr 23, 2023 |
|
R |
3 |
Analysis and visualization of RNA-Seq results |
Oct 06, 2023 |
|
Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |
|
Python |
2 |
A webserver for Ig-Seq Analysis Pipeline |
May 25, 2021 |
|
HTML |
2 |
Nextflow pipeline for ATAC-seq data analysis |
Feb 04, 2023 |
|
R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
R |
2 |
Analysis Pipeline for Single Cell ATAC-seq |
Jul 30, 2022 |