|
Python |
2 |
Snakemake pipeline of CLAM processing m6A RIP-seq (MeRIP) |
May 05, 2021 |
|
Python |
3 |
Snakemake pipeline for running HUMAnN2 |
Jul 22, 2022 |
|
None |
2 |
Snakemake pipeline for running MetaPhlAn3 |
Feb 23, 2023 |
|
Python |
2 |
Snakemake pipeline for running TOBIAS analysis |
Feb 22, 2024 |
|
Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
|
Python |
2 |
Snakemake based pipeline for analysing iCLIP-Seq data |
Jan 28, 2023 |
|
Shell |
11 |
ENCODE DNase-seq pipeline essentials for running on dnanexus. |
Nov 07, 2019 |
|
HTML |
2 |
Test data for ENCODE atac-seq-pipeline |
Dec 04, 2019 |
|
Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
|
Python |
5 |
Snakemake-pipeline for benchmarking genotypers |
Jan 15, 2023 |
|
Python |
2 |
Snakemake Pipeline to generate training data for predicting dataset difficulty |
Jan 24, 2023 |
|
Python |
2 |
Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data |
Jun 29, 2023 |
|
Python |
64 |
ATAC-seq snakemake pipeline |
Oct 19, 2022 |
|
Python |
9 |
snakemake rules for running anvio |
Jan 14, 2021 |
|
Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
|
Python |
14 |
Snakemake pipeline for benchmarking read mappers |
May 04, 2023 |
|
Jupyter Notebook |
2 |
Snakemake pipeline for two pass alignment |
Apr 04, 2021 |
|
Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
|
Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
|
Python |
14 |
RNAseq pipeline based on snakemake |
Oct 11, 2022 |
|
Python |
2 |
STAR-RSEM pipeline in snakemake. |
Feb 28, 2023 |
|
Python |
17 |
A snakemake pipeline for 10X genomics cellranger |
Apr 20, 2023 |
|
Python |
16 |
snakemake pipeline for Hi-C post-processing |
Feb 21, 2023 |
|
Python |
3 |
Snakemake pipeline for SV discovery and analysis |
Dec 23, 2022 |
|
Python |
3 |
Snakemake pipeline for variant calling using GATK |
Mar 02, 2023 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
Python |
8 |
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data |
Oct 04, 2022 |
|
wdl |
4 |
ENCODE DNase-seq pipeline |
Feb 28, 2021 |
|
Python |
270 |
ENCODE ATAC-seq pipeline |
Aug 16, 2022 |
|
Python |
183 |
ENCODE ChIP-seq pipeline |
Aug 11, 2022 |
|
Python |
5 |
Single cell ATAC-Seq Snakemake pipeline |
Sep 25, 2021 |
|
Python |
2 |
Technical ChIP-Seq pipeline on snakemake |
Jan 24, 2023 |
|
Python |
2 |
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline |
Jul 20, 2023 |
|
Python |
17 |
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data |
Mar 13, 2023 |
|
Python |
2 |
Snakemake pipeline for processing ultra-long ONT datasets. |
May 12, 2022 |
|
Python |
15 |
Snakemake-like pipeline manager for reproducible Jupyter Notebooks |
Nov 16, 2021 |
|
Python |
5 |
Snakemake pipeline for microbiome diversity effect size benchmarking |
May 15, 2023 |
|
Python |
2 |
Snakemake pipeline for read mapping and variant calling |
Sep 08, 2022 |
|
R |
2 |
Snakemake pipeline to create EiaD dataset for eyeIntegration |
Nov 10, 2022 |
|
Jupyter Notebook |
31 |
snakemake pipeline for creating trees from sequence sets |
Oct 11, 2023 |
|
Python |
2 |
Collection of Snakemake pipeline for commin bioinformatics tasks |
Aug 30, 2023 |
|
Scala |
2 |
Batch ETL pipeline to mirror ENCODE data into the Jade Data Repository. |
Oct 12, 2021 |
|
Python |
3 |
16S pipeline using qiime2 created with snakemake |
Apr 01, 2023 |
|
HTML |
2 |
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files. |
Jan 05, 2023 |
|
Python |
10 |
A Snakemake-based pipeline for gene mapping in Triticeae. |
Mar 30, 2022 |
|
HTML |
2 |
ENCODE / DNA nexus pipeline for file validation |
Apr 23, 2018 |
|
Python |
106 |
ENCODE Uniform processing pipeline for ChIP-seq |
Jun 08, 2022 |
|
Python |
2 |
ENCODE Uniform processing pipeline for ChIP-seq |
Sep 07, 2022 |
|
Python |
2 |
Profile for running snakemake with slurm job submissions |
Nov 22, 2021 |
|
Shell |
41 |
A Github action for running a Snakemake workflow |
Jun 15, 2022 |