|
Python |
3 |
ONT Long-read 16S Snakemake pipeline using Emu |
Jan 04, 2024 |
|
Python |
2 |
Snakemake Pipeline to Taxonomically Classify Nanopore Long Read 16S Datasets |
Jul 01, 2022 |
|
Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
|
Python |
2 |
Snakemake workflow for comprehensive ONT analysis |
Mar 31, 2023 |
|
Python |
16 |
snakemake pipeline for Hi-C post-processing |
Feb 21, 2023 |
|
Python |
62 |
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads |
Jul 22, 2022 |
|
Python |
2 |
Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data |
Jun 29, 2023 |
|
Python |
11 |
A SingleCell RNASeq pre-processing pipeline built on snakemake |
Jan 11, 2023 |
|
Python |
2 |
Snakemake pipeline of CLAM processing m6A RIP-seq (MeRIP) |
May 05, 2021 |
|
Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
|
Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
|
Python |
3 |
Snakemake pipeline for running HUMAnN2 |
Jul 22, 2022 |
|
None |
2 |
Snakemake pipeline for running MetaPhlAn3 |
Feb 23, 2023 |
|
Python |
5 |
Snakemake-pipeline for benchmarking genotypers |
Jan 15, 2023 |
|
Python |
6 |
Hybrid (and long-only) bacterial assembly pipeline for many isolates using Snakemake and Snaketool |
Apr 15, 2023 |
|
Makefile |
88 |
ONT assembly and Illumina polishing pipeline |
Jan 28, 2023 |
|
Python |
64 |
ATAC-seq snakemake pipeline |
Oct 19, 2022 |
|
Python |
84 |
STAR based ENCODE Long RNA-Seq processing pipeline |
Jun 24, 2022 |
|
Python |
17 |
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data |
Mar 13, 2023 |
|
Shell |
2 |
Viral genome assembly pipeline for WGS using ONT |
Jan 27, 2023 |
|
Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
|
Python |
14 |
Snakemake pipeline for benchmarking read mappers |
May 04, 2023 |
|
Jupyter Notebook |
2 |
Snakemake pipeline for two pass alignment |
Apr 04, 2021 |
|
Python |
2 |
Snakemake pipeline for running TOBIAS analysis |
Feb 22, 2024 |
|
Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
|
Python |
14 |
RNAseq pipeline based on snakemake |
Oct 11, 2022 |
|
Python |
2 |
STAR-RSEM pipeline in snakemake. |
Feb 28, 2023 |
|
Python |
17 |
A snakemake pipeline for 10X genomics cellranger |
Apr 20, 2023 |
|
Python |
3 |
Snakemake pipeline for SV discovery and analysis |
Dec 23, 2022 |
|
Python |
3 |
Snakemake pipeline for variant calling using GATK |
Mar 02, 2023 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
Python |
5 |
Single cell ATAC-Seq Snakemake pipeline |
Sep 25, 2021 |
|
Python |
2 |
Technical ChIP-Seq pipeline on snakemake |
Jan 24, 2023 |
|
Python |
2 |
A snakemake pipeline for QTL mapping. Based on the GTEX pipeline |
Jul 20, 2023 |
|
Python |
14 |
snakemake workflow for post-processing scATACseq data |
Oct 04, 2022 |
|
Python |
13 |
A text processing pipeline for turning unstructured text data into hierarchical datasets |
Jan 15, 2023 |
|
Python |
15 |
Snakemake-like pipeline manager for reproducible Jupyter Notebooks |
Nov 16, 2021 |
|
Python |
5 |
Snakemake pipeline for microbiome diversity effect size benchmarking |
May 15, 2023 |
|
Python |
2 |
Snakemake based pipeline for analysing iCLIP-Seq data |
Jan 28, 2023 |
|
Python |
2 |
Snakemake pipeline for read mapping and variant calling |
Sep 08, 2022 |
|
R |
2 |
Snakemake pipeline to create EiaD dataset for eyeIntegration |
Nov 10, 2022 |
|
Jupyter Notebook |
31 |
snakemake pipeline for creating trees from sequence sets |
Oct 11, 2023 |
|
Python |
2 |
Collection of Snakemake pipeline for commin bioinformatics tasks |
Aug 30, 2023 |
|
Python |
3 |
16S pipeline using qiime2 created with snakemake |
Apr 01, 2023 |
|
Python |
10 |
A Snakemake-based pipeline for gene mapping in Triticeae. |
Mar 30, 2022 |
|
Python |
2 |
Snakemake pipeline for running CLAM on ENCODE eCLIP data |
May 02, 2022 |
|
None |
4 |
An Model for Ultra Long Gene Expression sequences |
Jun 13, 2023 |
|
Jupyter Notebook |
5 |
optimizing deep learning for ultra-small biomedical datasets |
Mar 19, 2022 |
|
Python |
2 |
long-TUC-seq pipeline |
May 12, 2022 |
|
Python |
9 |
SnakeMake pipeline to run BlobTools on public assemblies |
Mar 02, 2023 |