|
Python |
64 |
ATAC-seq snakemake pipeline |
Oct 19, 2022 |
|
Python |
2 |
Snakemake pipeline for running CLAM on ENCODE eCLIP data |
May 02, 2022 |
|
Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
|
Python |
5 |
Single cell ATAC-Seq Snakemake pipeline |
Sep 25, 2021 |
|
Python |
2 |
Technical ChIP-Seq pipeline on snakemake |
Jan 24, 2023 |
|
Python |
2 |
Snakemake pipeline for Ribo-Seq analysis |
Mar 14, 2019 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
Python |
2 |
Snakemake based pipeline for analysing iCLIP-Seq data |
Jan 28, 2023 |
|
Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
|
Python |
154 |
ATAC-seq and DNase-seq processing pipeline |
Apr 21, 2023 |
|
Python |
16 |
snakemake pipeline for Hi-C post-processing |
Feb 21, 2023 |
|
Python |
3 |
RNA-Seq Analysis - Jeremy Leipzig M6A |
Feb 09, 2022 |
|
Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
|
Python |
2 |
Snakemake pipeline for processing ultra-long ONT datasets. |
May 12, 2022 |
|
Python |
2 |
🧪 Optimized protocol for m6A-SAC-seq |
Oct 03, 2022 |
|
Python |
106 |
ENCODE Uniform processing pipeline for ChIP-seq |
Jun 08, 2022 |
|
Python |
2 |
ENCODE Uniform processing pipeline for ChIP-seq |
Sep 07, 2022 |
|
Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
|
Python |
11 |
A SingleCell RNASeq pre-processing pipeline built on snakemake |
Jan 11, 2023 |
|
Python |
32 |
Detection of m6A from direct RNA-Seq data |
Jun 06, 2022 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Python |
3 |
This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake. |
Jan 23, 2023 |
|
Python |
84 |
STAR based ENCODE Long RNA-Seq processing pipeline |
Jun 24, 2022 |
|
R |
10 |
Processing scRNA-seq data with kallisto|bustools pipeline |
Dec 08, 2022 |
|
Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
|
Python |
2 |
Snakemake Pipeline for processing BioMob WP2 partial genome sequencing data |
Jun 29, 2023 |
|
Python |
92 |
a snakemake pipeline to process ChIP-seq files from GEO or in-house |
Oct 19, 2022 |
|
Python |
2 |
Pipeline for processing whole-genome Population STARR-seq data |
May 28, 2021 |
|
R |
42 |
A modular, containerized pipeline for ATAC-seq data processing |
Mar 28, 2023 |
|
Python |
7 |
A modular, containerized pipeline for PRO-seq data processing |
Apr 06, 2023 |
|
HTML |
2 |
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files. |
Jan 05, 2023 |
|
Python |
3 |
Snakemake workflow to analyze bulk RNA-seq |
Nov 08, 2022 |
|
Nextflow |
3 |
Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed … |
Nov 23, 2021 |
|
Jupyter Notebook |
9 |
DNA-Seq pipeline |
Mar 15, 2022 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
Python |
20 |
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq). |
Apr 23, 2023 |
|
Python |
14 |
RNAseq pipeline based on snakemake |
Oct 11, 2022 |
|
Python |
3 |
Snakemake pipeline for running HUMAnN2 |
Jul 22, 2022 |
|
None |
2 |
Snakemake pipeline for running MetaPhlAn3 |
Feb 23, 2023 |
|
Python |
5 |
Snakemake-pipeline for benchmarking genotypers |
Jan 15, 2023 |
|
Python |
2 |
STAR-RSEM pipeline in snakemake. |
Feb 28, 2023 |
|
Python |
2 |
4DN ATAC-seq pipeline, inherited from ENCODE ATAC-seq pipeline |
Oct 31, 2022 |
|
Python |
19 |
Ultimate ATAC-seq Data Processing & Analysis Workflow. A Snakemake implementation of the BSF's ATAC-seq Data … |
Apr 08, 2023 |
|
Python |
17 |
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data |
Mar 13, 2023 |
|
R |
4 |
RNA-Seq Workflow Based on Snakemake and Conda |
May 28, 2020 |
|
CSS |
19 |
RNA-Seq Snakemake example with Jekyll homepage creation |
May 29, 2022 |
|
R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
|
Python |
3 |
CITE-seq pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) |
Apr 14, 2023 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
Python |
14 |
Snakemake pipeline for benchmarking read mappers |
May 04, 2023 |