Stars
4
Forks
0
Language
None
Last Updated
Jan 22, 2021
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| C++ | 282 | Fast Whole-Genome Similarity (ANI) Estimation | May 21, 2023 | |
| Nextflow | 32 | A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences | Aug 20, 2022 | |
| C++ | 98 | Fast HLA type inference from whole-genome data | May 04, 2023 | |
| Python | 33 | Phylogeny Enhanded Prediction of PAN-genome | Jan 17, 2023 | |
| Python | 5 | Whole genome workflows | Jul 28, 2022 | |
| C++ | 121 | A fast whole-genome aligner based on de Bruijn graphs | May 19, 2023 | |
| Python | 8 | Whole Genome Annotation Pipeline | Aug 13, 2022 | |
| Nextflow | 20 | Whole Exome/Whole Genome Sequencing alignment pipeline | Oct 18, 2022 | |
| Python | 2 | A phylogeny of vertebrates which have genome assemblies available | Oct 05, 2016 | |
| Python | 2 | Clinical Whole Genome Sequencing Pipeline | May 12, 2022 | |
| Shell | 5 | SNVPhyl whole genome phylogenomics pipeline. | Feb 13, 2023 | |
| Perl | 4 | DNANexus Whole Genome Bisulphite Analysis Pipeline | Nov 15, 2018 | |
| Nextflow | 14 | Whole Genome Sequenceing Structural Variation Pipelines | Mar 08, 2022 | |
| Julia | 74 | Julia for Whole-genome Analysis Software | Aug 17, 2022 | |
| C++ | 19 | Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. | Feb 10, 2023 | |
| Python | 14 | ENCODE whole-genome bisulfite sequencing (WGBS) pipeline | May 24, 2022 | |
| C | 71 | Whole Genome Simulator for Next-Generation Sequencing | Jul 21, 2022 | |
| HTML | 5 | Visualize whole genome alignments as linear maps | May 19, 2020 | |
| Cython | 10 | Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation. | Jul 28, 2022 | |
| Perl | 5 | Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing | May 20, 2022 | |
| C | 83 | Flexible genotype query among 30,000+ samples whole-genome | Aug 09, 2022 | |
| Perl | 8 | Whole genome core alignments from multiple draft genomes | Feb 12, 2023 | |
| Perl | 6 | Scripts used for whole genome analysis comparison (WGAC) | Jan 18, 2022 | |
| R | 11 | West Coast Dream Team Whole Genome Bisulfite Sequencing | Apr 22, 2022 | |
| C++ | 3 | Identification of genomic differences from whole-genome alignments | Nov 29, 2022 | |
| Shell | 87 | Making whole bacterial genome sequencing data analysis easy | Apr 30, 2023 | |
| Python | 7 | CoVarPlot - Covarage Variant Plots for viral whole genome sequencing | May 06, 2022 | |
| Python | 2 | Pipeline for processing whole-genome Population STARR-seq data | May 28, 2021 | |
| Perl | 3 | Tools/scripts for the SNVPhyl whole genome phylogenomics pipeline | Feb 14, 2022 | |
| Python | 7 | Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data | Dec 17, 2022 | |
| JavaScript | 33 | A Whole Genome Alignment Visualization Tool for the Web | Feb 03, 2023 | |
| C++ | 24 | Select primer sets for selective whole genome amplification (SWGA) | Feb 10, 2023 | |
| C++ | 2 | A Scalable GPU System for Pairwise Whole Genome Alignments | Oct 22, 2022 | |
| Nextflow | 3 | Quantify microbial abundance from whole-genome shotgun sequencing data | Feb 15, 2023 | |
| Python | 3 | Imputation workflow for low coverage whole genome sequencing data | Apr 10, 2023 | |
| R | 23 | Allele-specific copy number estimation with whole genome sequencing | Feb 22, 2023 | |
| C++ | 7 | Fast viral consensus genome reconstruction | May 17, 2023 | |
| C++ | 120 | Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data | May 04, 2023 | |
| R | 7 | Visualization toolkit for SARS-CoV-2 whole genome sequencing data | Aug 07, 2022 | |
| R | 16 | Inferring expressed genes by whole-genome sequencing of plasma DNA | Sep 18, 2022 | |
| Python | 74 | Python package and CLI for whole-genome duplication related analyses | May 23, 2023 | |
| R | 3 | DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS) | May 15, 2022 | |
| C++ | 130 | regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. | May 08, 2023 | |
| JavaScript | 272 | Fast, flexible and extensible genome browser. | May 14, 2023 | |
| wdl | 3 | Workflows used for processing whole genome sequence data + germline variant calling. | Jul 19, 2022 | |
| Python | 9 | A python library for single cell whole-genome sequencing quality evaluation | May 10, 2021 | |
| Perl | 4 | Adaption of the original PennCNV algorithm for whole-genome sequencing data | Sep 02, 2021 | |
| C++ | 6 | CRISPR, faster, better – The Crackling method for whole-genome target detection | May 17, 2023 | |
| Shell | 4 | MetaFX – library for feature extraction from whole-genome metagenome sequencing data | Oct 02, 2023 | |
| Jupyter Notebook | 95 | Peregrine: Fast Genome Assembler Using SHIMMER Index | Jul 06, 2022 |