Stars
11
Forks
4
Language
R
Last Updated
Apr 22, 2022
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| R | 3 | West Coast Dream Team 5hmC analysis | Jan 18, 2023 | |
| Python | 14 | ENCODE whole-genome bisulfite sequencing (WGBS) pipeline | May 24, 2022 | |
| Nextflow | 20 | Whole Exome/Whole Genome Sequencing alignment pipeline | Oct 18, 2022 | |
| Python | 2 | Clinical Whole Genome Sequencing Pipeline | May 12, 2022 | |
| Python | 4 | tools for the processing of genome-wide bisulfite sequencing data | Aug 07, 2018 | |
| C | 71 | Whole Genome Simulator for Next-Generation Sequencing | Jul 21, 2022 | |
| R | 9 | West Coast fisheries data | May 31, 2022 | |
| JavaScript | 12 | West Coast Estuaries Explorer | Apr 04, 2022 | |
| Shell | 87 | Making whole bacterial genome sequencing data analysis easy | Apr 30, 2023 | |
| Python | 7 | CoVarPlot - Covarage Variant Plots for viral whole genome sequencing | May 06, 2022 | |
| Python | 7 | Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data | Dec 17, 2022 | |
| Nextflow | 3 | Quantify microbial abundance from whole-genome shotgun sequencing data | Feb 15, 2023 | |
| Python | 3 | Imputation workflow for low coverage whole genome sequencing data | Apr 10, 2023 | |
| R | 23 | Allele-specific copy number estimation with whole genome sequencing | Feb 22, 2023 | |
| None | 2 | West Coast Express Train for MonTransit | Nov 01, 2022 | |
| R | 7 | Visualization toolkit for SARS-CoV-2 whole genome sequencing data | Aug 07, 2022 | |
| R | 16 | Inferring expressed genes by whole-genome sequencing of plasma DNA | Sep 18, 2022 | |
| Python | 9 | A python library for single cell whole-genome sequencing quality evaluation | May 10, 2021 | |
| Perl | 4 | Adaption of the original PennCNV algorithm for whole-genome sequencing data | Sep 02, 2021 | |
| Shell | 4 | MetaFX – library for feature extraction from whole-genome metagenome sequencing data | Oct 02, 2023 | |
| R | 4 | VAST for the NWFSC West Coast data | Jan 29, 2023 | |
| Python | 2 | West Coast Governor's Alliance marine debris database | Apr 14, 2015 | |
| C++ | 120 | Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data | May 04, 2023 | |
| Python | 2 | Telomeasure estimates average telomere length from whole genome sequencing (WGS) BAM files. | Jun 14, 2022 | |
| C | 75 | Genotype and phase short tandem repeats using Illumina whole-genome sequencing data | Aug 15, 2022 | |
| Scheme | 6 | 2023 West Coast stock assessment for shortspine thornyhead | Mar 17, 2023 | |
| JavaScript | 10 | Data Registry for the West Coast Governors Alliance | Nov 01, 2021 | |
| Python | 8 | bisulfite sequencing pipeline from fastq to methylation reports | Jun 21, 2022 | |
| Python | 5 | Whole genome workflows | Jul 28, 2022 | |
| Java | 2 | Simple drivetrain code for the "West Coast Drive" drivetrain. | Jan 28, 2023 | |
| R | 4 | Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing. | Aug 01, 2022 | |
| HTML | 2 | Identification and characterization of contamination sources in whole genome sequencing of Gyrodactylus bullatarudis parasites | Jun 26, 2021 | |
| Shell | 3 | A collection of scripts to run variant aggregation tests from whole-genome sequencing data. | Jun 07, 2022 | |
| R | 114 | Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing. | Aug 09, 2022 | |
| Python | 12 | In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data | Apr 04, 2023 | |
| Shell | 4 | Pipeline for whole genome sequencing analysis for outbreak detection and characterization of foodborne bacteria | Jun 11, 2021 | |
| None | 2 | Home for the GA4GH Quality Control of Whole Genome Sequencing metrics and reference implementations | Dec 13, 2022 | |
| C++ | 19 | Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. | Feb 10, 2023 | |
| Python | 8 | Whole Genome Annotation Pipeline | Aug 13, 2022 | |
| None | 4 | Fast whole genome phylogeny | Jan 22, 2021 | |
| JavaScript | 2 | Shift a meeting from UTC to a West Coast time | May 12, 2019 | |
| Perl | 52 | Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing … | Feb 24, 2022 | |
| Nextflow | 129 | Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing | Jan 28, 2023 | |
| Python | 96 | Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | Jan 28, 2023 | |
| None | 38 | Runs a combination of tools to generate structural variant calls on whole-genome sequencing data | May 31, 2023 | |
| WDL | 3 | Workflows for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing | Dec 13, 2023 | |
| C++ | 62 | A pipeline for analyzing DNA methylation data from bisulfite sequencing. | Aug 10, 2022 | |
| Python | 21 | Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data | Oct 27, 2022 | |
| C++ | 2 | whole exome sequencing analysis pipeline | Dec 24, 2023 | |
| CSS | 22 | InterARTIC - An interactive local web application for viral whole genome sequencing utilising the artic … | Apr 28, 2022 |