Stars
40
Forks
17
Language
Python
Last Updated
May 02, 2024
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Python | 3 | WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs) | Sep 23, 2023 | |
| C | 75 | Genotype and phase short tandem repeats using Illumina whole-genome sequencing data | Aug 15, 2022 | |
| Python | 2 | Genome-wide contact analysis using sklearn | Sep 29, 2022 | |
| Python | 65 | mgatk: mitochondrial genome analysis toolkit | Jul 06, 2022 | |
| C | 10 | SWAT - System-Wide Analysis Toolkit | Mar 12, 2023 | |
| C | 2 | Tandem Repeats Finder: a program to analyze DNA sequences | Aug 11, 2022 | |
| Python | 8 | NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data | May 02, 2023 | |
| C++ | 36 | Tool for assessing/improving assembly quality in extra-long tandem repeats | Feb 18, 2023 | |
| C++ | 60 | A suite of tools for detecting expansions of short tandem repeats | Apr 14, 2023 | |
| Java | 7 | Graphical Interface for the Genome Analysis Toolkit (GATK) | Jan 28, 2023 | |
| Python | 7 | Scripts and utilities related to analyzing short tandem repeats (STRs). | Apr 28, 2022 | |
| Python | 2 | TelomereSearch - identify telomeric repeats from genome assemblies | Jul 11, 2022 | |
| R | 2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data | Apr 10, 2021 | |
| Python | 7 | Mitochondrial Alteration Enrichment and Genome Analysis Toolkit | Mar 02, 2022 | |
| Python | 3 | scripts associated with the genome-wide analysis of MYBs in the banana genome | Jun 05, 2022 | |
| Jupyter Notebook | 5 | Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort | Sep 10, 2022 | |
| C++ | 58 | A tool for visualizing alignments of reads in regions containing tandem repeats | May 22, 2023 | |
| Python | 4 | Plant GWA (genome-wide analysis), GEP (genomic-enable prediction) and GE (genome evolution) toolset | Sep 03, 2021 | |
| R | 16 | RCC workshop, "Analysis of Genetic Data 2: Mapping Genome-wide Associations." | Jun 10, 2022 | |
| Java | 2 | Genotype Investigator for Genome Wide Analyses | Nov 14, 2022 | |
| Python | 2 | Genome-wide SNP Mapper and Genome Comparison Tool | Oct 12, 2022 | |
| Java | 3 | Toolkit for genome sciences | Jul 15, 2014 | |
| Python | 4 | Genome-wide detection of positive selection | Jun 23, 2022 | |
| C++ | 2 | Genome-wide Efficient Mixed Model Association | Apr 25, 2019 | |
| R | 2 | Construct genome wide gene regulatory networks | Apr 28, 2023 | |
| R | 33 | Genome-wide association studies tutorial 🧬 | May 24, 2023 | |
| Python | 28 | a hidden Markov model to infer simple repeats from genome sequences | Oct 11, 2022 | |
| Python | 10 | Workflow for detecting genome-wide horizontal gene transfers | Aug 09, 2021 | |
| Python | 17 | toolkit for analyzing genome editing experiments | Feb 28, 2023 | |
| HTML | 3 | Interactive notebook for quality control and Spark-based genome wide association analysis using HAIL and VariantSpark. | May 10, 2020 | |
| R | 64 | Genome wide orthology inference and dNdS estimation | Apr 26, 2023 | |
| R | 2 | Explore Results from Genome-Wide Association Analyses | Dec 10, 2023 | |
| Shell | 7 | Genome Analysis Pipeline for Lecture | May 13, 2023 | |
| Nextflow | 9 | UNDER CONSTRUCTION: A pipeline for Genome Wide Association Studies | Aug 04, 2022 | |
| Julia | 12 | Genome-wide association studies (GWAS) for ordered categorical phenotypes | Dec 20, 2021 | |
| Python | 17 | Genome-wide scan for balancing selection using beta statistic | May 03, 2023 | |
| Perl | 5 | Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing | May 20, 2022 | |
| C | 5 | POC: toolkit for GOON (genome json) files | Dec 21, 2018 | |
| R | 2 | Toolkit for downloading and processing genome annotations. | Jan 31, 2023 | |
| Python | 2 | Genome Editing Analysis of Long UNidirectional sequencing for GenOme Rearrangements | Aug 11, 2022 | |
| Julia | 5 | This package performs standard Genome-wide Association Studies. | Nov 23, 2021 | |
| Python | 395 | Fast genome-wide functional annotation through orthology assignment | Oct 17, 2022 | |
| Python | 5 | Genome-wide investigation of non-canonical splice sites | Jun 05, 2022 | |
| Perl | 4 | Genome-wide multi-process chromosome-level SSR search | Apr 08, 2023 | |
| C | 2 | GenomeTools genome analysis system. | Nov 11, 2022 | |
| Python | 4 | Genome Decomposition Analysis pipeline | Jan 09, 2023 | |
| C | 2 | GenomeTools genome analysis system. | Dec 12, 2017 | |
| Python | 25 | MGnify genome analysis pipeline | Jun 16, 2022 | |
| Python | 4 | tools for the processing of genome-wide bisulfite sequencing data | Aug 07, 2018 | |
| Python | 8 | An unbiased method for genome-wide CBE off-targets assessment | Nov 24, 2022 |