Stars
15
Forks
1
Language
Python
Last Updated
Apr 22, 2024
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| C | 75 | Genotype and phase short tandem repeats using Illumina whole-genome sequencing data | Aug 15, 2022 | |
| Nextflow | 2 | Bacterial Genomics workflow for short(Illumina) and long-read (Oxford Nanopore) sequencing data | Jan 17, 2024 | |
| Python | 2 | Plotting functions of Oxford Nanopore sequencing data | Feb 24, 2024 | |
| Python | 10 | Functions to extract information from Oxford Nanopore sequencing data and alignments | Aug 31, 2022 | |
| Python | 79 | Analysis components from Oxford Nanopore Research | Apr 21, 2023 | |
| None | 8 | Helpful scripts for working with Oxford Nanopore Sequencing data | Dec 08, 2020 | |
| Go | 2 | Automated data mangement for Oxford Nanopore DNA sequencing instruments | Apr 30, 2024 | |
| Python | 7 | Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data | Feb 27, 2023 | |
| Java | 7 | Analysis tool for Nanopore sequencing data | Oct 21, 2022 | |
| Java | 31 | Analysis tool for Nanopore sequencing data | Oct 18, 2021 | |
| Python | 7 | Scripts and utilities related to analyzing short tandem repeats (STRs). | Apr 28, 2022 | |
| Jupyter Notebook | 8 | A Cloud Pipeline to Analyze Long Read Sequencing Data from Oxford Nanopore and PacBio Sequencers | Apr 15, 2024 | |
| Python | 7 | A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data | Sep 20, 2022 | |
| Python | 42 | Analysis pipelines from Oxford Nanopore Technologies' Research Division | Mar 15, 2023 | |
| Python | 4 | Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and … | Apr 06, 2023 | |
| Python | 59 | A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies | Jan 25, 2023 | |
| Python | 29 | Toolkit for genome-wide analysis of tandem repeats | May 11, 2023 | |
| Python | 107 | Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data | Jan 28, 2023 | |
| Python | 4 | An awesome Oxford Nanopore Pipeline for direct RNA-sequencing | May 23, 2023 | |
| R | 5 | Best practices for the Analysis of Oxford Nanopore Direct RNA sequencing Data (Begik*, Lucas*, et … | Apr 26, 2023 | |
| C++ | 60 | A suite of tools for detecting expansions of short tandem repeats | Apr 14, 2023 | |
| Shell | 2 | A generic best practice workflow for processing human Oxford Nanopore Technologies (ONT) sequencing data. | Mar 29, 2024 | |
| Python | 49 | A snakemake pipeline for SV analysis from nanopore genome sequencing | May 15, 2023 | |
| C++ | 14 | Identifying repeats in high-throughput sequencing data | Aug 15, 2022 | |
| C++ | 19 | Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. | Feb 10, 2023 | |
| Nextflow | 5 | Removal of human reads from ncov nanopore sequencing data | Feb 18, 2023 | |
| Python | 27 | Sorts amplicons from Nanopore sequencing data based on similarity | Mar 08, 2024 | |
| C++ | 261 | De novo assembly from Oxford Nanopore reads. | Jul 28, 2022 | |
| C++ | 29 | De novo assembly from Oxford Nanopore reads. | Apr 01, 2023 | |
| Nextflow | 5 | Basic workflow for nanopore sequencing data | Apr 24, 2023 | |
| C++ | 2 | Experimental software for de novo assembly from Nanopore sequencing data. | Nov 14, 2023 | |
| None | 3 | Dockerfile for the Albacore basecaller from Oxford Nanopore | Jul 19, 2017 | |
| C | 3 | a python package for short tandem repeat identification and analysis | Oct 07, 2022 | |
| Python | 51 | Quality control tools for nanopore sequencing data | May 15, 2023 | |
| C++ | 2 | Fast signal-level matching for direct RNA nanopore sequencing | Feb 07, 2023 | |
| Python | 6 | Single cell Nanopore sequencing data for Genotype and Phenotype | May 10, 2023 | |
| C | 95 | Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration) | Apr 26, 2023 | |
| Python | 92 | Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., … | Apr 26, 2023 | |
| C | 15 | An accurate repeat detection from Nanopore data using deep learning and image techniques | Dec 14, 2022 | |
| Shell | 2 | Rapid Streptococcus suis Serotyping on Nanopore Sequencing Data | Feb 18, 2022 | |
| GDScript | 2 | sequencing data analysis | Aug 08, 2023 | |
| Python | 3 | WebSTR-API: programmatic access to WebSTR, database of Human genome-wide variation in Short Tandem Repeats (STRs) | Sep 23, 2023 | |
| Ruby | 4 | Homebrew casks for applications from Oxford Nanopore Technologies PLC and Metrichor Ltd. | Dec 14, 2022 | |
| Python | 5 | Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing | May 14, 2023 | |
| Nextflow | 4 | Nextflow pipeline for NAb-seq (analyses nanopore sequencing data from hybridomas and single B cells) | Mar 16, 2023 | |
| C++ | 270 | Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data | Apr 17, 2023 | |
| Python | 24 | A simple tool for extracting reads from Oxford Nanopore fast5 files | Aug 05, 2022 | |
| Python | 2 | CPD sequencing data analysis | Jul 27, 2023 | |
| Perl | 8 | Processing and analysis of data coming from Illumina sequencing machines | Apr 16, 2022 | |
| None | 2 | Data and analysis for NA12878 genome on nanopore | May 06, 2018 |