|
|
R |
4 |
Clone trees for Cancer Evolution studies from bulk sequencing data. |
May 08, 2022 |
|
|
JavaScript |
2 |
Clinical DNA Sequencing Analysis and Data Warehouse |
Mar 11, 2015 |
|
|
Java |
147 |
Bayesian Evolutionary Analysis Sampling Trees |
Jul 28, 2022 |
|
|
C++ |
13 |
An algorithm for clonal tree reconstruction from multi-sample cancer sequencing data |
Jun 11, 2019 |
|
|
Java |
2 |
Bayesian Evolutionary Analysis by Sampling Trees |
Mar 31, 2017 |
|
|
Java |
192 |
Bayesian Evolutionary Analysis by Sampling Trees |
Aug 30, 2022 |
|
|
Python |
4 |
Pipeline for BLAST analysis of high-throughput DNA sequencing data. |
Aug 01, 2017 |
|
|
R |
19 |
Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data |
May 10, 2022 |
|
|
R |
2 |
Bulk-RNA Sequencing Analysis in R |
Aug 01, 2022 |
|
|
R |
3 |
Liquid Biopsy Sequencing analysis tools for cell free DNA sequencing |
Jun 18, 2018 |
|
|
Shell |
125 |
DNA sequencing analysis notes from Ming Tang |
Oct 11, 2022 |
|
|
HTML |
2 |
Clonal hematopoiesis detection in cancer patients using cell free DNA sequencing |
Apr 19, 2023 |
|
|
R |
14 |
Analysis pipelines for cancer genome sequencing in mice. |
Dec 20, 2022 |
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|
GDScript |
2 |
sequencing data analysis |
Aug 08, 2023 |
|
|
Python |
2 |
CPD sequencing data analysis |
Jul 27, 2023 |
|
|
R |
6 |
Probabilistic outlier identification for bulk RNA sequencing data |
Nov 02, 2022 |
|
|
Python |
7 |
Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data |
Dec 17, 2022 |
|
|
Go |
2 |
Automated data mangement for Oxford Nanopore DNA sequencing instruments |
Apr 30, 2024 |
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|
HTML |
16 |
Pipeline analysis for whole exome sequencing of pancreatic cancer PDX models |
Aug 22, 2021 |
|
|
Python |
44 |
cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data |
May 16, 2023 |
|
|
Python |
15 |
Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis |
Jun 15, 2021 |
|
|
R |
3 |
Analysis of statistical power and false positives for cancer exome sequencing studies |
May 31, 2022 |
|
|
C++ |
62 |
A pipeline for analyzing DNA methylation data from bisulfite sequencing. |
Aug 10, 2022 |
|
|
None |
11 |
A Toolkit for analyzing next-generation DNA Re-Sequencing data |
May 07, 2023 |
|
|
C# |
116 |
Canvas - Copy number variant (CNV) calling from DNA sequencing data |
Apr 19, 2023 |
|
|
wdl |
2 |
Calls Copy Number Variants on sequencing data from cancer patients |
May 23, 2023 |
|
|
Python |
3 |
Various scripts for sequencing data analysis |
Jan 03, 2023 |
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|
Java |
7 |
Analysis tool for Nanopore sequencing data |
Oct 21, 2022 |
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|
Java |
31 |
Analysis tool for Nanopore sequencing data |
Oct 18, 2021 |
|
|
Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
|
|
Python |
15 |
NANOME pipeline (Nanopore long-read sequencing data consensus DNA methylation detection) |
May 21, 2022 |
|
|
Jupyter Notebook |
2 |
Using SVM for Breast Cancer data analysis |
May 12, 2023 |
|
|
Jupyter Notebook |
6 |
Cancer data analysis on the DepMap dataset |
Feb 01, 2023 |
|
|
None |
2 |
Bulk RNA sequencing analysis of developing human induced pluripotent cell-derived retinal organoids |
Feb 09, 2023 |
|
|
Julia |
39 |
Analysis of profiling data using trees |
Jun 15, 2022 |
|
|
Perl |
8 |
A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing … |
Aug 04, 2022 |
|
|
Python |
2 |
Analysis of fitness landscape of HIV-1 from longitudinal data |
Jul 01, 2018 |
|
|
R |
2 |
Next-generation sequencing data analysis with ribios |
Jan 05, 2022 |
|
|
Python |
19 |
Comprehensive analysis of small RNA sequencing data |
Apr 09, 2023 |
|
|
Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
|
|
Python |
16 |
Tools for detecting DNA modifications from single molecule, real-time sequencing data |
May 16, 2022 |
|
|
R |
4 |
Analysis of RNA epitranscriptome sequencing data with affinity-based shotgun sequencing approach |
Jul 03, 2022 |
|
|
Jupyter Notebook |
2 |
Repo for analysis of SMM DNA + RNA data. |
Feb 25, 2022 |
|
|
Nextflow |
4 |
NYU Langone Genome PACT (Genome Profiling of Actionable Cancer Targets) targeted exome sequencing analysis pipeline. |
Feb 06, 2023 |
|
|
R |
3 |
Talk Through Data Analysis |
Mar 28, 2023 |
|
|
Python |
5 |
A tool for the visualization and analysis of longitudinal behavioral data |
Dec 24, 2019 |
|
|
R |
4 |
Data analysis for colorectal cancer projects, mainly using metabolomics data. |
May 16, 2022 |
|
|
Shell |
32 |
A simplified pipeline for ctDNA sequencing data analysis |
Apr 23, 2023 |
|
|
Python |
7 |
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data |
Feb 27, 2023 |
|
|
Common Workflow Language |
4 |
CWL toolkit for single-cell sequencing data analysis |
Jan 22, 2023 |