rnaseqlib

RNA-Seq pipeline

Stars

3

Forks

2

Language

Python

Last Updated

May 04, 2021

Similar Repos
Repo Language Stars Description Updated At
Python 2 RNA-Seq NGS Pipeline Feb 21, 2023
Python 3 RNA seq analysis pipeline Nov 07, 2022
Python 2 Benzimidazole RNA-Seq and smRNA-Seq Pipeline May 28, 2020
Python 7 Single Cell RNA-seq Pipeline May 18, 2022
Python 5 Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline Mar 31, 2023
Shell 2 Pipeline for gecco RNA-seq analysis Oct 05, 2021
Perl 2 Nextflow based RNA-seq analysis pipeline Nov 19, 2021
wdl 26 ENCODE long read RNA-seq pipeline Aug 09, 2022
R 3 A single-cell RNA-seq pipeline Apr 20, 2023
Python 25 Zavolan-Lab Automated RNA-Seq Pipeline Apr 10, 2023
Python 5 Epitope discovery pipeline for RNA-seq Jan 25, 2020
Java 10 Unix-based RNA-seq quantification pipeline Dec 01, 2021
Nextflow 5 GENE-SWitCH project RNA-Seq analysis pipeline Jun 14, 2022
R 9 RNA-seq, QC and differential analysis pipeline Aug 15, 2022
R 30 Snakemake based pipeline for RNA-Seq analysis Mar 13, 2023
Python 2 Pipeline for investigating RNA structure-Seq data May 15, 2021
Shell 2 Yet another Grape RNA-Seq analyses pipeline Jun 03, 2018
R 9 Repository for CCBR single cell RNA-Seq pipeline Jun 16, 2022
Nextflow 76 RNA-seq analysis pipeline for detection gene-fusions Jul 28, 2022
Python 84 STAR based ENCODE Long RNA-Seq processing pipeline Jun 24, 2022
Shell 3 ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell Jun 07, 2022
Nextflow 4 A proof of concept RNA-Seq pipeline with Nextflow Dec 20, 2018
Nextflow 34 A proof of concept RNA-Seq pipeline with Nextflow Mar 06, 2023
Python 18 Rna-seq pipeline, From FASTQ to differential expression analysis... Oct 08, 2020
Python 2 A comprehensive quality-control and quantification RNA-seq pipeline Aug 22, 2022
Python 7 A comprehensive quality-control and quantification RNA-seq pipeline May 29, 2023
Python 2 A comprehensive quality-control and quantification RNA-seq pipeline Mar 22, 2024
Groovy 3 A Nextflow pipeline for single-cell RNA-Seq dataset Apr 21, 2024
R 9 A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) May 23, 2022
R 4 A nextflow pipeline for performing bacterial RNA-Seq data analysis. Apr 17, 2023
Python 12 Rapid RNA-seq pipeline using AWS lambda functions for alignment Aug 09, 2021
HTML 71 A simple RNA-Seq differential gene expression pipeline using Nextflow May 15, 2023
C 1305 RNA-seq aligner Aug 17, 2022
Shell 3 RNA-seq analyses. May 16, 2022
R 18 RNA-seq analysis Sep 21, 2022
C 3 RNA-seq aligner Jul 20, 2020
C++ 8 RNA-Seq sampling Mar 13, 2023
Jupyter Notebook 2 Pipeline for assembling TCRs from single-cell RNA-seq with TRACER May 15, 2021
Python 14 RNA-seq pipeline for raw sequence alignment and transcript/gene quantification. Aug 09, 2022
Python 20 A pipeline for identifying indel derived neoantigens using RNA-Seq data Jan 07, 2022
Nextflow 3 rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis Apr 08, 2023
R 16 DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline Apr 09, 2023
Python 6 Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments Mar 06, 2023
Shell 9 Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq … Sep 14, 2022
HTML 2 script for RNA-seq and Chip-seq Apr 17, 2021
HTML 2 RNA-Seq Demystified workshop Jun 13, 2021
Python 20 Bulk RNA-seq analysis. Aug 07, 2022
R 9 RNA-seq analysis scripts Apr 04, 2022
Python 3 pipline of RNA-seq Apr 17, 2021
Jupyter Notebook 2 single-cell RNA-seq Mar 28, 2023