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Python |
6 |
tRNA gene Activity Predictor |
Feb 17, 2023 |
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Python |
6 |
tRNA Analysis of eXpression |
Feb 01, 2023 |
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R |
2 |
Decoding gene regulation in the fly brain |
Apr 13, 2022 |
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Python |
5 |
Wrapper for Ontologizer gene ontology analysis tool, with manipulation and display of downstream results |
May 15, 2015 |
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Python |
2 |
Upstream ChIP-seq analysis pipeline for tRNA data |
Nov 27, 2014 |
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Python |
26 |
Scripts for building computational models of gene regulation with tensorflow |
Jun 27, 2022 |
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Jupyter Notebook |
10 |
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell … |
Jul 27, 2022 |
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Perl |
4 |
Gene Rearrangement AnalySiS |
Mar 28, 2022 |
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R |
18 |
Gene network analysis |
Jan 04, 2023 |
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Julia |
6 |
Dynamical information enables inference of gene regulation at single-cell scale |
Jan 29, 2023 |
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Python |
2 |
Constructs a Bayesian network of gene regulation from binary expression data and makes inferences about … |
Dec 17, 2022 |
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Python |
2 |
Gene signature similarity analysis |
Jul 31, 2020 |
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Python |
19 |
Gene-flank analysis tool |
Mar 08, 2023 |
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R |
2 |
Gene Methylation Enrichment Analysis |
Nov 03, 2023 |
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Python |
5 |
Quantitative analysis of native tRNA populations using direct RNA nanopore sequencing |
May 14, 2023 |
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HTML |
5 |
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression. |
Apr 19, 2023 |
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R |
274 |
Fast Gene Set Enrichment Analysis |
Aug 05, 2022 |
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R |
9 |
Flexible gene set enrichment analysis |
Jul 27, 2022 |
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Scala |
3 |
Gene-List Network Enrichment Analysis |
Nov 25, 2020 |
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R |
6 |
Network-based Gene Set Analysis |
Aug 09, 2022 |
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R |
3 |
Analysis of gene expression microarray |
Jan 31, 2023 |
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Python |
3 |
CHS gene structure prediction analysis |
Feb 18, 2024 |
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R |
2 |
Agilent gene expression microarray analysis |
May 14, 2023 |
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R |
3 |
R package for protemics downstream a analysis |
Feb 05, 2022 |
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R |
27 |
Arabidopsis RNA_-seq downstream analysis shiny app |
Sep 28, 2021 |
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R |
2 |
A set of scripts used to analyze DamID-seq experiments in the Laboratory of Analysis of … |
Sep 12, 2019 |
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R |
3 |
This repository maintains an end to end downstream workflow (post FASTQ alignment) of bulk RNA … |
Sep 08, 2022 |
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Java |
2 |
Integrated Analysis of Gene/Protein Lists |
Jul 17, 2021 |
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PHP |
3 |
Automated gene expression analysis using CorEx |
Jul 19, 2022 |
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R |
15 |
Gene Co-expression Network analysis pipeline |
May 02, 2023 |
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R |
4 |
Suite of fusion gene analysis tools |
Dec 03, 2021 |
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R |
2 |
Parameterized fast gene set enrichment analysis. |
Feb 09, 2023 |
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R |
23 |
GSCALite: Gene set for cancer analysis |
May 06, 2023 |
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R |
10 |
Gene Set Enrichment Analysis Made Awesome |
Aug 27, 2020 |
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CSS |
4 |
Gene Expression Omnibus Analysis with Shiny - |
Mar 03, 2020 |
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Java |
3 |
A platform for standardized modular downstream genome analysis. |
Jun 11, 2021 |
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R |
42 |
Prepare Sailfish and Salmon output for downstream analysis |
May 29, 2022 |
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R |
5 |
Scripts for downstream analysis plotting of pipeline output |
Mar 08, 2023 |
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R |
3 |
Applications and downstream analysis of BioPlex PPI data |
Mar 03, 2023 |
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Python |
3 |
Benchmarking enrichment analysis algorithms using transcription factor-gene and drug-gene libraries. |
Jan 10, 2019 |
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Python |
2 |
Tools for bioinformatics analysis (i.e. alignment cleaning, CDS retrieval and downstream analysis) |
Nov 20, 2022 |
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R |
22 |
Differential gene expression analysis and pathway analysis of RNAseq data |
Apr 19, 2022 |
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R |
2 |
Paired DGE and DGS analysis for gene set enrichment analysis |
Dec 05, 2022 |
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R |
2 |
Pipeline for SCAN-seq2 data processing and downstream analysis. |
Aug 12, 2022 |
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Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
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R |
16 |
SPATA Package for spatial gene expression analysis |
Apr 20, 2023 |
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R |
36 |
A Toolbox for Spatial Gene Expression Analysis |
Apr 24, 2023 |
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R |
3 |
🧬 GENE analysis toolKIT based on R |
Jun 22, 2022 |
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C++ |
3 |
Probabilistic Gene Expression in the Middle Analysis |
Jul 31, 2020 |
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HTML |
25 |
Visual exploratory analysis of gene expression data |
Aug 08, 2022 |