|
Python |
217 |
Deep count autoencoder for denoising scRNA-seq data |
Apr 04, 2023 |
|
Jupyter Notebook |
5 |
Inferring cellular trajectories from scRNA-seq using Pseudocell Tracer |
Mar 08, 2023 |
|
R |
10 |
Processing scRNA-seq data with kallisto|bustools pipeline |
Dec 08, 2022 |
|
Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
|
R |
18 |
scRNA-seq data visualization from scrattch |
Jun 21, 2022 |
|
None |
2 |
Using a VAE model with flexible priors for modelling scRNA-seq data |
Oct 08, 2020 |
|
C++ |
2 |
Cell-to-cell communication with enriched pathways project, using scRNA-seq data |
Sep 26, 2023 |
|
R |
4 |
Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models |
Oct 08, 2023 |
|
R |
7 |
A clusterability measure for scRNA-seq data. |
May 31, 2022 |
|
HTML |
14 |
Marker gene selection from scRNA-seq data |
May 10, 2022 |
|
R |
2 |
scRNA-seq data explorer based on Shiny |
Mar 23, 2022 |
|
R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
|
Python |
4 |
Cell cycle classifier for scRNA-seq data. |
Feb 25, 2022 |
|
Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
|
R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
|
Python |
31 |
Demultiplexing pooled scRNA-seq data with or without genotype reference |
Jul 28, 2022 |
|
Python |
2 |
Spatial Transcritome Annotation with scRNA-seq data and Downstream Analysis |
Nov 18, 2022 |
|
Python |
3 |
scRNA-seq pipeline using Salmon for quantification |
Feb 08, 2022 |
|
Python |
3 |
Bench-marking classification tools for scRNA-seq data |
Jun 12, 2022 |
|
R |
8 |
Integrative analysis for scTCR- and scRNA-seq data |
Nov 04, 2022 |
|
R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
|
R |
83 |
Accurate and robust imputation of scRNA-seq data |
Apr 10, 2023 |
|
Python |
166 |
Bench-marking classification tools for scRNA-seq data |
May 15, 2023 |
|
R |
2 |
Shiny app to explore Clytia scRNA-seq data |
Oct 06, 2022 |
|
Python |
10 |
a tool for identifying circular RNAs using RNA-Seq data |
Oct 07, 2021 |
|
Python |
3 |
CITE-seq pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) |
Apr 14, 2023 |
|
Jupyter Notebook |
2 |
Python pipelines for analysis of adipocyte scRNA-seq data |
Feb 24, 2022 |
|
HTML |
2 |
Identifying robust gene-gene correlations in scRNA-seq data |
May 04, 2023 |
|
Python |
2 |
Prediction of RNA splicing kinetics in scRNA-seq data |
Apr 10, 2023 |
|
R |
38 |
A R package for integrated scRNA-seq data analysis using the RPCI algorithm |
Feb 27, 2023 |
|
Python |
6 |
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data |
May 24, 2022 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
R |
2 |
Neighbor-seq infers direct cell-cell interaction network in tissues from scRNA-seq data. |
Mar 24, 2023 |
|
R |
47 |
scPred package for cell type prediction from scRNA-seq data |
Mar 05, 2023 |
|
R |
14 |
Flexible, probablistic metrics for quality control of scRNA-seq data |
May 19, 2022 |
|
R |
19 |
Cell-cell communication and lineage inference for scRNA-seq data |
Mar 24, 2022 |
|
Perl |
2 |
mapping somatic variants to cell barcodes in scRNA-Seq data |
Sep 03, 2022 |
|
R |
4 |
A Shiny app for analyzing and visualizing scRNA-seq data. |
Jan 27, 2023 |
|
R |
3 |
scBubbletree: quantitative tool for visual exploration of scRNA-seq data |
Mar 14, 2023 |
|
Python |
45 |
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy. |
Aug 17, 2022 |
|
Scala |
3 |
Extends Scala Seq with ring (circular) methods |
Dec 05, 2022 |
|
Python |
6 |
A simple python package for doublet detection in scRNA-seq data |
Aug 15, 2022 |
|
Jupyter Notebook |
38 |
Harmony framework for connecting scRNA-seq data from discrete time points |
Mar 12, 2023 |
|
Python |
2 |
scBoolSeq: scRNA-Seq data binarisation and synthetic generation from Boolean dynamics |
Oct 05, 2022 |
|
HTML |
4 |
Extended Louvain Clustering algorithm for applications in scRNA-Seq data analysis |
Dec 08, 2023 |
|
R |
3 |
The scRNA-seq data IO between R and Python(R version) |
Mar 08, 2024 |
|
R |
25 |
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data |
Feb 02, 2024 |
|
Python |
26 |
AutoImpute : Autoencoder based imputation of single cell RNA-seq data |
Feb 14, 2023 |
|
Jupyter Notebook |
3 |
Analysis of public and unpublished scRNA-seq data from bone marrow donors |
Sep 24, 2022 |
|
HTML |
2 |
A benchmark of existing gene co-expression estimator on scRNA-seq data. |
Jan 26, 2023 |