dseqr

single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.

Stars

19

Forks

4

Language

R

Last Updated

May 07, 2024

Similar Repos
Repo Language Stars Description Updated At
Python 47 Pileup biallelic SNPs from single-cell and bulk RNA-seq data Aug 11, 2022
R 4 Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment Mar 31, 2023
Makefile 22 Examples analyses using the single-cell RNA-seq data from mouse cell atlases May 20, 2022
Jupyter Notebook 2 single-cell RNA-seq Mar 28, 2023
R 3 Single cell RNA-seq analysis of pancreatic islets with drug treatment Apr 22, 2024
R 342 Inferring CNV from Single-Cell RNA-Seq Aug 10, 2022
Python 7 Single Cell RNA-seq Pipeline May 18, 2022
Shell 2 Single Cell RNA-Seq Imputation Mar 31, 2021
Python 2 Single cell RNA-seq tools Jul 20, 2022
Python 4 single-cell RNA-seq clustering Jul 27, 2021
MATLAB 3 Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) Oct 14, 2020
Makefile 4 BCR reconstruction from short single cell RNA-seq Feb 21, 2021
HTML 2 Cluster single cell RNA-seq data Sep 30, 2020
R 3 A single-cell RNA-seq pipeline Apr 20, 2023
Rust 41 Single-Cell RNA-seq pseudo-aligner Mar 22, 2023
R 22 Single cell RNA-seq analysis bundle Mar 28, 2023
R 9 A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) May 23, 2022
R 6 One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data Aug 10, 2022
Python 7 BASIC: BCR and TCR assembly from single cell RNA-seq Nov 20, 2022
Shell 3 RNA-seq analyses. May 16, 2022
Python 4 Single-cell RNA-seq data analysis and visualization Jun 12, 2022
R 8 Core utilities for single-cell RNA-seq Dec 12, 2021
R 2 Adaptive Visualization for Single-cell RNA-seq Apr 07, 2023
Jupyter Notebook 2 Single cell RNA-seq of human melanocytes Sep 23, 2021
Jupyter Notebook 63 Preprocessing of single-cell RNA-Seq (deprecated) Apr 08, 2022
HTML 19 HSCI/Catalyst Single-cell RNA-Seq Workshop Aug 29, 2022
Jupyter Notebook 84 scDeepCluster for Single Cell RNA-seq data Apr 18, 2023
R 2 single cell RNA-seq results report system Aug 08, 2023
Python 3 Discovering causal transcription factors from single-cell RNA-seq data Oct 03, 2022
HTML 11 Isoform co-usage networks from single-cell RNA-seq data Dec 03, 2022
R 114 Signature Analysis and Visualization for Single-Cell RNA-seq Apr 18, 2023
None 18 List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures Jul 25, 2022
Shell 9 Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq … Sep 14, 2022
Python 2 Best practices, scripts and workflows for performing bulk RNA-seq expression analyses Jul 27, 2023
R 4 Tidy Transcriptomics for Single-cell RNA Sequencing Analyses Jun 27, 2022
R 39 Algorithm for the inference of cell types from single-cell RNA-seq data. Feb 15, 2023
Python 3 Single Cell RNA-seq Analysis by Topic Modeling May 24, 2022
R 9 Repository for CCBR single cell RNA-Seq pipeline Jun 16, 2022
TeX 2 Analysis of single cell RNA-seq data course Sep 25, 2019
C++ 88 Genetic multiplexing of barcoded single cell RNA-seq Jul 13, 2022
Jupyter Notebook 2 Doublet detection in single-cell RNA-seq data. May 19, 2020
None 27 Detect doublets in single-cell RNA-seq data Apr 05, 2023
TeX 49 Analysis of single cell RNA-seq data course Apr 23, 2023
Python 36 Dimensionality reduction for single cell RNA-seq data Dec 09, 2022
R 19 scGSVA: Perform GSVA for single cell RNA seq Mar 10, 2023
R 2 single cell RNA-seq survey of childhood medulloblastoma Apr 13, 2023
Python 3 Doublet detection in single-cell RNA-seq data. Aug 22, 2018
R 21 benchmark for single-cell RNA-seq imputation methods Mar 16, 2023
Python 4 Single Cell RNA-Seq analysis toolbox for Python Sep 13, 2018
Python 20 Bulk RNA-seq analysis. Aug 07, 2022