|
Rust |
41 |
Single-Cell RNA-seq pseudo-aligner |
Mar 22, 2023 |
|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
|
HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
|
R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
|
HTML |
16 |
UNDER DEVELOPMENT: Workflow for single-cell RNA-seq analysis using Seurat |
May 23, 2023 |
|
None |
13 |
10x single cell RNA-seq data from the developing mouse retina |
Aug 03, 2021 |
|
R |
9 |
Repository for CCBR single cell RNA-Seq pipeline |
Jun 16, 2022 |
|
Python |
20 |
Bulk RNA-seq analysis. |
Aug 07, 2022 |
|
Groovy |
3 |
A Nextflow pipeline for single-cell RNA-Seq dataset |
Apr 21, 2024 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Python |
47 |
Pileup biallelic SNPs from single-cell and bulk RNA-seq data |
Aug 11, 2022 |
|
MATLAB |
3 |
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) |
Oct 14, 2020 |
|
R |
9 |
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq) |
May 23, 2022 |
|
R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
|
R |
7 |
An ExperimentHub package for the 1.3 million brain cell 10X single-cell RNA-seq data set. |
May 15, 2021 |
|
HTML |
36 |
Introduction to bulk RNA-seq |
Aug 08, 2022 |
|
R |
14 |
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates. |
Jan 31, 2023 |
|
Python |
2 |
RNA-Seq NGS Pipeline |
Feb 21, 2023 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
Shell |
2 |
Single Cell RNA-Seq Imputation |
Mar 31, 2021 |
|
Python |
2 |
Single cell RNA-seq tools |
Jul 20, 2022 |
|
Python |
4 |
single-cell RNA-seq clustering |
Jul 27, 2021 |
|
Jupyter Notebook |
2 |
Pipeline for assembling TCRs from single-cell RNA-seq with TRACER |
May 15, 2021 |
|
Python |
254 |
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA. |
Apr 26, 2023 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
C++ |
72 |
Pipeline for initial analysis of droplet-based single-cell RNA-seq data |
Jul 07, 2022 |
|
R |
22 |
Single cell RNA-seq analysis bundle |
Mar 28, 2023 |
|
HTML |
18 |
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data |
May 14, 2023 |
|
None |
18 |
List of papers on deconvolution of cell types in bulk RNA-seq based on single-cell signatures |
Jul 25, 2022 |
|
Python |
3 |
Snakemake workflow to analyze bulk RNA-seq |
Nov 08, 2022 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
Groovy |
8 |
Pipeline for analysing 10X single cell data |
Sep 30, 2020 |
|
Python |
3 |
cell-free ChIP-seq pipeline |
Nov 28, 2022 |
|
Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
wdl |
26 |
ENCODE long read RNA-seq pipeline |
Aug 09, 2022 |
|
Python |
25 |
Zavolan-Lab Automated RNA-Seq Pipeline |
Apr 10, 2023 |
|
Python |
5 |
Epitope discovery pipeline for RNA-seq |
Jan 25, 2020 |
|
Java |
10 |
Unix-based RNA-seq quantification pipeline |
Dec 01, 2021 |
|
R |
8 |
Core utilities for single-cell RNA-seq |
Dec 12, 2021 |
|
R |
342 |
Inferring CNV from Single-Cell RNA-Seq |
Aug 10, 2022 |
|
R |
2 |
Adaptive Visualization for Single-cell RNA-seq |
Apr 07, 2023 |
|
Jupyter Notebook |
2 |
Single cell RNA-seq of human melanocytes |
Sep 23, 2021 |
|
Jupyter Notebook |
63 |
Preprocessing of single-cell RNA-Seq (deprecated) |
Apr 08, 2022 |
|
HTML |
19 |
HSCI/Catalyst Single-cell RNA-Seq Workshop |
Aug 29, 2022 |
|
Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
|
R |
2 |
single cell RNA-seq results report system |
Aug 08, 2023 |
|
R |
4 |
Scripts to analyze single-cell and bulk RNA & ChIP-seq of TNBC under drug treatment |
Mar 31, 2023 |