Stars
3
Forks
1
Language
Python
Last Updated
Mar 23, 2022
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| Python | 5 | Snakemake workflow to call germline variant | Oct 15, 2019 | |
| Nextflow | 10 | Workflow for germline short variant discovery using GATK4 | Sep 12, 2022 | |
| Python | 3 | A Snakemake workflow for large-scale SARS-CoV-2 analyses. | Mar 23, 2022 | |
| Common Workflow Language | 2 | CWL germline variant caller | Feb 18, 2023 | |
| HTML | 29 | Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses | May 06, 2022 | |
| Python | 2 | Variant calling workflow for mixed ploidy samples implemented in Snakemake and using GATK4 | Apr 24, 2024 | |
| Python | 2 | Snakemake+python workflow to highly parallelize variant calling in non-model organisms | Sep 03, 2023 | |
| wdl | 117 | Workflows for germline short variant discovery with GATK4 | Mar 14, 2023 | |
| C++ | 316 | Strelka2 germline and somatic small variant caller | Jun 01, 2023 | |
| Python | 12 | Snakemake workflow for neoantigen prediction | Apr 28, 2023 | |
| Python | 2 | Snakemake Workflow For WGBS Data | Jan 10, 2022 | |
| Python | 3 | Snakemake pipeline for variant calling using GATK | Mar 02, 2023 | |
| Python | 12 | Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms. | Jul 11, 2022 | |
| Python | 11 | Ancient microbiome snakemake workflow | Mar 15, 2023 | |
| Nextflow | 2 | Germline structural variant calling pipeline for short read WGS datasets | Jul 13, 2023 | |
| Python | 2 | Snakemake module for performing Mitochondrial short variant discovery | Jan 15, 2023 | |
| Python | 2 | Snakemake pipeline for read mapping and variant calling | Sep 08, 2022 | |
| Python | 8 | A snakemake workflow for metagenomic projects | Apr 01, 2022 | |
| Python | 2 | Snakemake workflow for comprehensive ONT analysis | Mar 31, 2023 | |
| Python | 2 | A Snakemake workflow for fungal metatranscriptomics | Feb 15, 2022 | |
| Python | 3 | Snakemake workflow for evaluation of assemblies | Mar 07, 2022 | |
| Python | 8 | Snakemake workflow for the vg toolkit. | Apr 25, 2023 | |
| Python | 2 | A snakemake workflow for using tsinfer | Oct 30, 2023 | |
| HTML | 7 | A general purpose Snakemake workflow to perform selected unsupervised analyses and visualizations of high-dimensional data. | Jan 29, 2023 | |
| Python | 3 | Small snakemake best practice workflow | Mar 18, 2022 | |
| Nextflow | 3 | Tumor mutation burden & genomic signatures analysis workflow | Mar 26, 2021 | |
| wdl | 3 | Workflows used for processing whole genome sequence data + germline variant calling. | Jul 19, 2022 | |
| Python | 9 | A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, … | May 27, 2023 | |
| Python | 5 | snakemake workflow for bulk RNA-seq workflow using STAR-edgeR | Oct 25, 2022 | |
| Python | 14 | snakemake workflow for post-processing scATACseq data | Oct 04, 2022 | |
| Jupyter Notebook | 9 | Modular snakemake workflow for assembly-based metagenomics | Dec 06, 2022 | |
| Python | 2 | A snakemake workflow for assembly with HiFi | May 01, 2024 | |
| Nextflow | 7 | Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices | Dec 11, 2021 | |
| Python | 4 | snakemake workflow comparing Genrich and MACS2 | Nov 09, 2020 | |
| Python | 3 | A small ncRNA workflow in Snakemake. | Dec 07, 2022 | |
| Python | 3 | Some NGS workflow created by snakemake | Apr 21, 2023 | |
| wdl | 3 | Variant Effect Predictor Workflow | Jan 25, 2023 | |
| Python | 4 | Workflow for RSV analyses on Nextstrain.org | Mar 28, 2023 | |
| Shell | 41 | A Github action for running a Snakemake workflow | Jun 15, 2022 | |
| Python | 7 | Snakemake workflow for comparison of differential abundance ranks | Aug 14, 2022 | |
| Python | 8 | A Snakemake workflow for Fermi-LAT data reduction | Oct 27, 2023 | |
| R | 4 | A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered … | Apr 07, 2023 | |
| Python | 3 | A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM … | Jan 10, 2023 | |
| C# | 88 | Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows. | May 15, 2023 | |
| Python | 3 | Snakemake workflow to analyze bulk RNA-seq | Nov 08, 2022 | |
| R | 6 | A Snakemake workflow for performing differential expression analyses (DEA) on (multimodal) sc/snRNA-seq data powered by … | Mar 09, 2023 | |
| Nextflow | 2 | variant annotation workflow with VEP | Dec 21, 2021 | |
| R | 3 | Snakemake workflow for 10X Genomics WGS analysis using TitanCNA | Apr 20, 2022 | |
| Python | 5 | A repo for the Twist HiFi capture/snakemake workflow | Apr 20, 2023 | |
| wdl | 4 | Workflows for germline short variant discovery with GATK4 optimized by Intel for on-premises infrastructure | Apr 12, 2021 |