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Jupyter Notebook |
5 |
useful functions for scRNA-seq analysis |
May 24, 2022 |
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HTML |
8 |
scRNA-Seq analysis vignettes |
Nov 05, 2021 |
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R |
9 |
A pipeline for scRNA-seq data analysis |
Apr 04, 2023 |
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None |
2 |
Codes used in scRNA-seq analysis. |
Jan 20, 2024 |
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R |
8 |
Integrative analysis for scTCR- and scRNA-seq data |
Nov 04, 2022 |
|
R |
4 |
A list of scRNA-seq analysis tools |
Aug 31, 2022 |
|
R |
49 |
Haplotype-aware CNV analysis in scRNA-Seq |
Aug 12, 2022 |
|
R |
322 |
A list of scRNA-seq analysis tools |
Oct 16, 2022 |
|
Jupyter Notebook |
2 |
Python pipelines for analysis of adipocyte scRNA-seq data |
Feb 24, 2022 |
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R |
2 |
Bootstrapping methods for 3' UTR analysis of scRNA-seq |
Nov 14, 2023 |
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Shell |
13 |
wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq |
Apr 06, 2023 |
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R |
113 |
Multi-sample multi-group scRNA-seq analysis tools |
Apr 16, 2023 |
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Python |
11 |
Consistent Clusters for scRNA-seq |
Nov 25, 2022 |
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R |
48 |
Useful functions to make your scRNA-seq plot more cool! |
Aug 09, 2022 |
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HTML |
4 |
Extended Louvain Clustering algorithm for applications in scRNA-Seq data analysis |
Dec 08, 2023 |
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Shell |
4 |
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex |
Oct 14, 2021 |
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Python |
2 |
Spatial Transcritome Annotation with scRNA-seq data and Downstream Analysis |
Nov 18, 2022 |
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Swift |
3 |
High-level (convenient) Lua bindings for Swift |
Feb 12, 2022 |
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R |
2 |
Codes for computational analysis of scRNA-seq data of mouse motor neurons |
Aug 22, 2023 |
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R |
87 |
Conversion between scRNA-seq objects |
Apr 17, 2023 |
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Jupyter Notebook |
5 |
scRNA-seq, regulation, and sysbio |
Jun 17, 2023 |
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HTML |
4 |
Deep learning tackles single-cell analysis - A survey of deep learning for scRNA-seq analysis |
May 15, 2022 |
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R |
38 |
A R package for integrated scRNA-seq data analysis using the RPCI algorithm |
Feb 27, 2023 |
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R |
5 |
Tools for clustering multiple-subject scRNA-seq |
Apr 27, 2022 |
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R |
7 |
A clusterability measure for scRNA-seq data. |
May 31, 2022 |
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Python |
3 |
scRNA-seq pipeline using Salmon for quantification |
Feb 08, 2022 |
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Python |
4 |
Cell cycle classifier for scRNA-seq data. |
Feb 25, 2022 |
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Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
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Jupyter Notebook |
7 |
Pipelines for re-analysis of iCLIP and scRNA-Seq data for UMI-tools publication |
Dec 16, 2022 |
|
Jupyter Notebook |
3 |
Analysis of public and unpublished scRNA-seq data from bone marrow donors |
Sep 24, 2022 |
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Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
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R |
18 |
scRNA-seq data visualization from scrattch |
Jun 21, 2022 |
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Jupyter Notebook |
4 |
Code to reproduce analysis and figures for scRNA-seq analysis of endometriosis in Tan et al. … |
Feb 01, 2023 |
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Python |
3 |
Bench-marking classification tools for scRNA-seq data |
Jun 12, 2022 |
|
Python |
217 |
Deep count autoencoder for denoising scRNA-seq data |
Apr 04, 2023 |
|
Python |
166 |
Bench-marking classification tools for scRNA-seq data |
May 15, 2023 |
|
HTML |
12 |
A guide to using the Python scRNA-seq analysis package Scanpy from R |
Oct 19, 2022 |
|
Python |
3 |
Analysis of imbalanced data and it's impacts in a scRNA-seq integration setting |
Nov 28, 2022 |
|
Python |
7 |
scRNA analysis pipeline |
Mar 23, 2023 |
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R |
2 |
FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis |
Jul 10, 2022 |
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HTML |
14 |
Marker gene selection from scRNA-seq data |
May 10, 2022 |
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R |
2 |
scRNA-seq data explorer based on Shiny |
Mar 23, 2022 |
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Perl |
2 |
MARS-SEQ pipeline (scrna module from tlsrc) |
Nov 17, 2022 |
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R |
18 |
gene regulatory network reconstruction from scRNA-Seq |
May 09, 2023 |
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Python |
15 |
scDrug: From scRNA-seq to Drug Repositioning |
Sep 10, 2023 |
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Python |
9 |
A set of Pyro models and functions to infer CNA from scRNA-seq data |
Nov 28, 2022 |
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Jupyter Notebook |
5 |
NectarCAM high level analysis tools |
Nov 25, 2022 |
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Python |
3 |
CITE-seq pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) |
Apr 14, 2023 |
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Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
Python |
19 |
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis |
Apr 10, 2023 |