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None |
4 |
Microbiome Data Simulator |
May 17, 2023 |
|
|
Jupyter Notebook |
10 |
Microbiome Simulation via Generative Adversarial Network |
Dec 12, 2022 |
|
|
R |
5 |
microbiome data simulation package |
Aug 16, 2022 |
|
|
HTML |
9 |
Graph based data integration with UMAP |
Apr 01, 2023 |
|
|
Python |
7 |
Qiime2 snakemake pipeline |
Aug 12, 2022 |
|
|
Python |
3 |
Qiime2 Sourmash Plugin |
Mar 05, 2021 |
|
|
C |
2 |
tools for microbiome data analysis |
Aug 09, 2022 |
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|
R |
2 |
Graphical models for microbiome data |
Aug 10, 2022 |
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|
HTML |
2 |
Microbiome Diversity Inspector - A tool for visual analysis of microbiome data. |
Jun 11, 2022 |
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|
Python |
4 |
Effect size calculations for microbiome data |
Apr 28, 2022 |
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|
Python |
10 |
Case-control matching for microbiome data |
Mar 27, 2023 |
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|
Python |
4 |
Get microbiome data from various repos |
Dec 18, 2023 |
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|
Python |
7 |
QIIME2 plug-in for breakaway |
Oct 29, 2022 |
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|
R |
105 |
Curated Metagenomic Data of the Human Microbiome |
Mar 29, 2023 |
|
|
None |
3 |
div-utils: tools for microbiome data analysis |
Jul 21, 2020 |
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|
Jupyter Notebook |
76 |
An interactive UMAP visualization of the MNIST data set. |
May 16, 2023 |
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|
R |
3 |
Codes and Data corresponding to the meta-analysis investigating age-gut microbiome interactions in seven major microbiome … |
Apr 07, 2023 |
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|
C++ |
5 |
Applications for umap |
May 21, 2022 |
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|
C++ |
19 |
UMAP C++ implementation |
Oct 15, 2022 |
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|
TypeScript |
2 |
tfjs + umap-js |
Mar 03, 2023 |
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|
None |
2 |
A tutorial for the QIIME2 forum |
Jan 06, 2024 |
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|
Julia |
41 |
For analysis of microbiome and microbial community data |
Jun 22, 2022 |
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|
Ruby |
11 |
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data |
Mar 11, 2023 |
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|
Python |
10 |
Microbiome profiling |
Mar 02, 2023 |
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|
R |
3 |
Microbiome analysis |
Dec 08, 2020 |
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|
R |
23 |
Microbiome analysis |
Jul 28, 2022 |
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|
Jupyter Notebook |
2 |
Sci-Kit's breast cancer (Wisconsin) dataset. Reduced dimensionality via UMAP, t-SNE, PCA. |
Jun 29, 2022 |
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|
Jupyter Notebook |
2 |
applying data analysis on titanic data sheet |
Jul 15, 2019 |
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|
HTML |
5 |
Customization d'une instance uMap |
Sep 30, 2021 |
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|
Python |
2 |
UMap-Deployment für VernetzteWelten.org |
Mar 23, 2021 |
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|
JavaScript |
286 |
JavaScript implementation of UMAP |
Apr 27, 2023 |
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|
JavaScript |
5 |
An invertible UMAP embedding |
Sep 28, 2022 |
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|
R |
2 |
umart generates umap art |
Mar 12, 2022 |
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|
R |
9 |
16S rRNA Sequencing Data from the Human Microbiome Project |
Nov 02, 2022 |
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|
R |
8 |
Code to accompany "Multitable Methods for Microbiome Data Integration" |
Feb 25, 2021 |
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|
Julia |
3 |
Functions and workflows for the analysis of microbiome data. |
Apr 11, 2023 |
|
|
Python |
3 |
16S pipeline using qiime2 created with snakemake |
Apr 01, 2023 |
|
|
Python |
6 |
A plugin for qiime2 that runs ITSxpress |
Oct 21, 2022 |
|
|
R |
228 |
microbiome R package |
Aug 07, 2022 |
|
|
TeX |
29 |
Orchestrating Microbiome Analysis |
Jul 21, 2022 |
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|
None |
144 |
Human Microbiome wiki |
Mar 14, 2023 |
|
|
Shell |
2 |
MicroBiome Stress Project |
Jun 08, 2018 |
|
|
TeX |
5 |
applying big data techniques to security |
Dec 09, 2019 |
|
|
Jupyter Notebook |
2 |
Network visualizations for bacterial species and metabolites from microbiome data |
Sep 23, 2021 |
|
|
JavaScript |
117 |
Understanding the theory behind UMAP |
Mar 02, 2023 |
|
|
Nextflow |
91 |
Amplicon sequencing analysis workflow using DADA2 and QIIME2 |
Aug 19, 2022 |
|
|
R |
5 |
Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes |
Feb 27, 2023 |
|
|
R |
8 |
Applying Rao's index to remote sensing data |
May 03, 2021 |
|
|
Python |
5 |
metagenome microbiome soil env. |
Jul 15, 2022 |
|
|
Python |
11 |
Ancient microbiome snakemake workflow |
Mar 15, 2023 |