|
Python |
5 |
Snakemake pipeline for microbiome diversity effect size benchmarking |
May 15, 2023 |
|
Julia |
3 |
Effect size measures |
Feb 06, 2022 |
|
None |
4 |
Microbiome Data Simulator |
May 17, 2023 |
|
C |
2 |
tools for microbiome data analysis |
Aug 09, 2022 |
|
R |
2 |
Graphical models for microbiome data |
Aug 10, 2022 |
|
R |
13 |
Effect Size Computation for Meta Analysis |
Jul 26, 2022 |
|
R |
50 |
R Package for effect size visualizations. |
Feb 28, 2023 |
|
HTML |
2 |
Microbiome Diversity Inspector - A tool for visual analysis of microbiome data. |
Jun 11, 2022 |
|
R |
5 |
microbiome data simulation package |
Aug 16, 2022 |
|
Python |
3 |
Investigating the effect of baseline correction on pupil-size data |
Dec 11, 2022 |
|
Python |
10 |
Case-control matching for microbiome data |
Mar 27, 2023 |
|
R |
4 |
Routines to do fish size spectrum calculations |
Mar 25, 2022 |
|
Python |
2 |
Stark effect calculations for molecules in dc electric fields |
Dec 09, 2021 |
|
None |
3 |
div-utils: tools for microbiome data analysis |
Jul 21, 2020 |
|
R |
17 |
Magnitude of the Effect - An Effect Size and CI calculator |
Apr 08, 2022 |
|
C |
3 |
Significance and Effect size measures for corpus comparison |
Dec 17, 2020 |
|
R |
8 |
Data calculations for Mortality.Watch |
Apr 30, 2023 |
|
HTML |
2 |
Power & sample size calculations, examples, and code, for Dr. Minnier |
May 26, 2022 |
|
Python |
4 |
Get microbiome data from various repos |
Dec 18, 2023 |
|
Julia |
41 |
For analysis of microbiome and microbial community data |
Jun 22, 2022 |
|
Ruby |
11 |
Microbiome Classifier Pipeline for Pacific Biosciences 16s Data |
Mar 11, 2023 |
|
R |
8 |
Code to accompany "Multitable Methods for Microbiome Data Integration" |
Feb 25, 2021 |
|
Julia |
3 |
Functions and workflows for the analysis of microbiome data. |
Apr 11, 2023 |
|
R |
105 |
Curated Metagenomic Data of the Human Microbiome |
Mar 29, 2023 |
|
Python |
3 |
Applying umap to microbiome data via QIIME2 |
Oct 03, 2022 |
|
R |
3 |
R package to estimate effect size gaps between two distributions with ordinal count data |
Apr 18, 2020 |
|
R |
3 |
Codes and Data corresponding to the meta-analysis investigating age-gut microbiome interactions in seven major microbiome … |
Apr 07, 2023 |
|
Jupyter Notebook |
2 |
Network visualizations for bacterial species and metabolites from microbiome data |
Sep 23, 2021 |
|
C++ |
4 |
Effect of buffer size on TCP and UDP flows |
Jun 07, 2020 |
|
HTML |
5 |
scripts for microbiome analysis |
Nov 12, 2022 |
|
Python |
10 |
Microbiome profiling |
Mar 02, 2023 |
|
R |
3 |
Microbiome analysis |
Dec 08, 2020 |
|
R |
23 |
Microbiome analysis |
Jul 28, 2022 |
|
JavaScript |
38 |
A fast and scalable phylogenetic tree viewer for microbiome data analysis |
Apr 21, 2023 |
|
R |
19 |
Analysis framework for integrating gut microbiome and host gene expression data |
May 09, 2023 |
|
R |
9 |
16S rRNA Sequencing Data from the Human Microbiome Project |
Nov 02, 2022 |
|
R |
5 |
Power/Precision Analysis to Determine Minimum Sample Size and Effect |
Jun 27, 2022 |
|
C |
2 |
A reasonably fast implementation of Cliff's delta effect size metric |
Jun 14, 2019 |
|
CSS |
2 |
Repository for the microbiome analysis |
Sep 07, 2023 |
|
R |
228 |
microbiome R package |
Aug 07, 2022 |
|
TeX |
29 |
Orchestrating Microbiome Analysis |
Jul 21, 2022 |
|
None |
144 |
Human Microbiome wiki |
Mar 14, 2023 |
|
Shell |
2 |
MicroBiome Stress Project |
Jun 08, 2018 |
|
Julia |
8 |
MIMIX: a Bayesian Mixed-Effects Model for Microbiome Data from Designed Experiments |
Sep 10, 2021 |
|
Python |
405 |
A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data. |
May 19, 2023 |
|
C++ |
4 |
Framework for numerical calculations, data analysis and visualisation |
Mar 19, 2023 |
|
C# |
2 |
My application for recursive calculations in data structures |
Mar 29, 2022 |
|
Stata |
2 |
Power and sample size calculations for RD designs using robust bias-corrected local polynomial inference. |
May 27, 2022 |
|
R |
3 |
A microbiome analysis toolkit for R |
Jul 20, 2022 |
|
PostScript |
7 |
Methods for fitting size spectra to data |
Jan 13, 2020 |