|
|
Python |
13 |
Daily analyses of genomic SARS-CoV-2 data |
Jun 07, 2022 |
|
|
Python |
20 |
ARTIC SARS-CoV-2 workflow and reporting |
Jun 24, 2022 |
|
|
R |
9 |
Collection of R scripts for SARS-CoV-2 (variant) analyses |
Mar 11, 2023 |
|
|
HTML |
6 |
Strategies for leveraging workflow systems to streamline large-scale biological analyses |
Aug 29, 2021 |
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|
Python |
3 |
A Snakemake workflow for germline variant burden analyses. |
Mar 23, 2022 |
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|
Python |
16 |
Reproducible workflow for SARS-CoV-2 recombinant sequence detection. |
Mar 06, 2023 |
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|
HTML |
2 |
Code for Analyses of SARS-COV-2 household transmission in Geneva |
Apr 13, 2021 |
|
|
None |
49 |
Large-scale ligand-based virtual screening for potential SARS-Cov-2 inhibitors using a deep neural network |
Dec 12, 2022 |
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|
R |
3 |
Phylogeographical analyses of SARS-CoV-2 variants of concern in Norway |
Jul 22, 2022 |
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|
None |
9 |
SARS-CoV-2 genomics |
Jan 06, 2022 |
|
|
None |
2 |
SARS-CoV-2 datahub |
Jul 06, 2021 |
|
|
Nextflow |
5 |
Fast trees for SARS-CoV-2 |
Jun 15, 2022 |
|
|
Python |
2248 |
Reverse engineering SARS-CoV-2 |
Aug 19, 2022 |
|
|
None |
2 |
Reverse engineering SARS-CoV-2 |
Jul 23, 2022 |
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Dart |
3 |
Another SARS-CoV-2 Tracker. |
Feb 15, 2022 |
|
|
Jupyter Notebook |
36 |
International SARS-CoV-2 surveillance |
Apr 11, 2023 |
|
|
None |
2 |
Reverse engineering SARS-CoV-2 |
Sep 26, 2022 |
|
|
None |
2 |
SARS-CoV-2 datasets for testing pipelines |
May 15, 2023 |
|
|
Python |
8 |
CoVigator - Monitoring SARS-CoV-2 mutations |
Jun 30, 2022 |
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|
Perl |
12 |
Bioinformatics analysis of SARS-CoV-2 |
Apr 04, 2022 |
|
|
Python |
10 |
Coronavirus (SARS-Cov-2) sequencing analysis |
Apr 19, 2022 |
|
|
None |
8 |
SARS-CoV-2 genome data analysis |
Mar 30, 2023 |
|
|
HTML |
4 |
Mutational spectrum of SARS-CoV-2 |
Apr 25, 2023 |
|
|
None |
2 |
Druggability analysis of SARS-CoV-2 |
May 07, 2020 |
|
|
Python |
2 |
SARS-CoV-2(Coronavirus) RNA visualization |
Jul 01, 2023 |
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|
R |
2 |
SARS-CoV-2 severity monitoring project |
Feb 22, 2023 |
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|
HTML |
2 |
Identities among SARS-CoV-2 variants and SARS-related coronaviruses |
Feb 01, 2023 |
|
|
Python |
4 |
large scale GC-MS data preprocessing workflow |
Feb 22, 2021 |
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|
R |
3 |
Analyses of MERS-CoV outbreaks |
May 08, 2020 |
|
|
Python |
1296 |
Nextstrain build for novel coronavirus SARS-CoV-2 |
Aug 17, 2022 |
|
|
Python |
40 |
SARS-Cov-2 Recombinant Finder for fasta sequences |
Aug 03, 2022 |
|
|
R |
2 |
Bioinformatic pipeline for SARS-CoV-2 sequence analysis |
Sep 18, 2023 |
|
|
Python |
2 |
REcombination BARcode (rebar) detection for SARS-CoV-2. |
May 25, 2023 |
|
|
None |
2 |
SARS-CoV-2 Peptide Vaccine, Gen 12 |
Apr 30, 2022 |
|
|
HTML |
14 |
PiGx SARS-CoV-2 wastewater sequencing pipeline |
Aug 04, 2022 |
|
|
Jupyter Notebook |
41 |
Pyro models of SARS-CoV-2 variants |
Aug 09, 2022 |
|
|
Python |
2 |
Interactive visualization of SARS-CoV-2 variants |
Jan 11, 2021 |
|
|
Jupyter Notebook |
2 |
SARS-CoV-2 RBD antibody escape calculator |
May 17, 2023 |
|
|
Python |
12 |
Snakemake workflow for neoantigen prediction |
Apr 28, 2023 |
|
|
Python |
2 |
Snakemake Workflow For WGBS Data |
Jan 10, 2022 |
|
|
Python |
6 |
Detection and tracking of overlapping cell nuclei for large scale mitosis analyses |
Aug 16, 2022 |
|
|
None |
510 |
Weibo-COV: A Large-Scale COVID-19 Social Media Dataset from Weibo |
Apr 13, 2023 |
|
|
Jupyter Notebook |
3 |
Snakemake workflow to systematically analyze BGCs and pangenomes of large number genomes |
May 04, 2023 |
|
|
Shell |
7 |
BEAR: viral diagnostic analysis pipeline for SARS-CoV-2 |
Jul 13, 2022 |
|
|
None |
2 |
SARS-CoV-2 resources for sequencing and genomic analysis |
Dec 09, 2021 |
|
|
None |
2 |
Information for RGTM 10169 (SARS-CoV-2 Synthetic RNA) |
Aug 04, 2021 |
|
|
Python |
11 |
Ancient microbiome snakemake workflow |
Mar 15, 2023 |
|
|
CSS |
4 |
Monitor of SARS-CoV-2 variants and mutations |
Dec 26, 2021 |
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|
TypeScript |
4 |
SARS-CoV-2 BioNTech/Pfizer vaccine as MIDI |
Dec 26, 2021 |
|
|
Python |
4 |
SARS-CoV-2 analysis using PacBio long reads |
Oct 05, 2021 |