Stars
22
Forks
6
Language
R
Last Updated
Sep 18, 2023
Similar Repos
| Repo | Language | Stars | Description | Updated At |
|---|---|---|---|---|
| R | 20 | Inferring gene co-expression networks from single cell gene expression data | Feb 07, 2023 | |
| Python | 13 | Tools for generating single-cell gene expression data | Mar 10, 2023 | |
| R | 5 | single cell Gene co-Expression Network Analysis | Mar 21, 2023 | |
| R | 2 | single-cell Gene and AnTibody Expression pipeline | May 24, 2023 | |
| Jupyter Notebook | 2 | A pathway-inferring VAE modification for single-cell gene expression data | Dec 03, 2022 | |
| Python | 13 | 🍊🔬 Orange add-on for gene expression of single cell data | Feb 28, 2022 | |
| C++ | 29 | Software for exploration of gene expression data from single-cell RNA sequencing. | May 10, 2022 | |
| R | 4 | single cell lineage reconstruction using paired lineage barcode and gene expression data | Oct 02, 2023 | |
| HTML | 16 | scGEAToolbox: Matlab toolbox for single-cell gene expression analyses | Apr 28, 2023 | |
| C++ | 18 | Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data | Mar 23, 2023 | |
| Jupyter Notebook | 5 | Vector representations of gene co-expression in single cell RNAseq. | Jul 27, 2022 | |
| Python | 218 | 10x Genomics Single Cell 3' Gene Expression and VDJ Assembly | Apr 24, 2023 | |
| C++ | 4773 | Combustion engine simulator that generates realistic audio. | Sep 01, 2022 | |
| None | 2 | Combustion engine simulator that generates realistic audio. | Mar 29, 2024 | |
| R | 3 | Measuring cell-to-cell gene expression variability in single-cell RNA-sequencing data: a comparative analysis and applications to … | Apr 20, 2023 | |
| Python | 25 | Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a … | Jul 26, 2022 | |
| Jupyter Notebook | 3 | LogBTFs: A method of inferring gene regulatory network from single-cell gene expression data using Boolean … | Nov 19, 2023 | |
| R | 9 | Shiny app for visualization, exploration of mouse brain single cell gene expression | Apr 26, 2022 | |
| R | 91 | Batch effects and the effective design of single-cell gene expression studies | Jan 26, 2023 | |
| Jupyter Notebook | 3 | Information Theoretic Framework for Paired Single Cell Gene Expression and TCR Sequencing | Jun 21, 2023 | |
| R | 9 | ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data | Nov 03, 2022 | |
| HTML | 34 | Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution | Aug 17, 2022 | |
| R | 37 | characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities | Jul 18, 2022 | |
| HTML | 2 | Identifying robust gene-gene correlations in scRNA-seq data | May 04, 2023 | |
| R | 24 | Gene set enrichment analysis for single-cell RNAseq data | May 17, 2023 | |
| Jupyter Notebook | 68 | SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate … | Apr 20, 2023 | |
| TeX | 49 | Count HLA alleles in single-cell RNA-seq data | Apr 19, 2023 | |
| R | 2 | Gene expression profiles of 63 immune cell types | May 09, 2022 | |
| Jupyter Notebook | 4 | Tools for mechanistic gene network inference from single-cell data | May 01, 2023 | |
| R | 2 | GCA: Gene Correlation Analysis for Single-cell RNA-seq data | Jun 06, 2019 | |
| Python | 155 | Differential expression analysis for single-cell RNA-seq data. | Apr 06, 2023 | |
| None | 2 | Differential expression analysis for single-cell RNA-seq data | Apr 14, 2021 | |
| R | 9 | Differential expression analysis for single-cell RNA-seq data | Nov 15, 2022 | |
| R | 84 | A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential … | Apr 22, 2023 | |
| JavaScript | 11 | AOE (All Of gene Expression): Index and meta-analysis of gene expression data that works | Apr 15, 2022 | |
| Python | 3 | SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data | Dec 21, 2022 | |
| Python | 2 | SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data | Nov 27, 2023 | |
| R | 6 | Using UMAP on gene expression data from single-gene deletion strains of yeast to identify gene … | Apr 01, 2023 | |
| Jupyter Notebook | 11 | Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression | Jan 11, 2022 | |
| R | 12 | Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles | Apr 13, 2022 | |
| Jupyter Notebook | 48 | CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology | Apr 26, 2023 | |
| HTML | 2 | Gene expression on C. elegans single cells | Oct 08, 2023 | |
| Java | 3 | Single Cell Expression Atlas web application | Aug 07, 2022 | |
| R | 13 | Analysis of Single Cell Expression, Normalization and Differential expression | Jul 01, 2022 | |
| R | 8 | Analysies of gene expression data using Gene Ontology | Nov 27, 2020 | |
| Jupyter Notebook | 3 | A tutorial for using an autoencoder neural network model to create a visually interpretable latent … | Nov 04, 2022 | |
| R | 4 | An R package for simulating cell-type specific and hierarchical single-cell expression data | Feb 10, 2023 | |
| Python | 4 | Interpretable Single-Cell Set Classification with Kernel Mean Embeddings | Mar 30, 2023 | |
| Python | 11 | A single cell sequencing read simulator. | Mar 27, 2023 | |
| Jupyter Notebook | 4 | SCING: Single Cell INtegrative Gene regulatory network inference | Mar 17, 2023 |