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|
R |
153 |
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA) |
Jul 13, 2022 |
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|
R |
274 |
Fast Gene Set Enrichment Analysis |
Aug 05, 2022 |
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R |
9 |
Flexible gene set enrichment analysis |
Jul 27, 2022 |
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R |
2 |
Parameterized fast gene set enrichment analysis. |
Feb 09, 2023 |
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R |
10 |
Gene Set Enrichment Analysis Made Awesome |
Aug 27, 2020 |
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R |
82 |
Easy single cell analysis platform for enrichment |
Mar 22, 2023 |
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Jupyter Notebook |
5 |
Vector representations of gene co-expression in single cell RNAseq. |
Jul 27, 2022 |
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R |
31 |
simpler single cell RNAseq data clustering |
Dec 14, 2022 |
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R |
2 |
simpler single cell RNAseq data Visualization |
Jul 13, 2022 |
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R |
2 |
Paired DGE and DGS analysis for gene set enrichment analysis |
Dec 05, 2022 |
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|
R |
2 |
GCA: Gene Correlation Analysis for Single-cell RNA-seq data |
Jun 06, 2019 |
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R |
9 |
Workflow for the analysis fo single-cell RNASeq data using R/bioconductor |
Nov 07, 2022 |
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|
R |
41 |
Inference of cell-cell communication from single-cell RNAseq data |
Apr 06, 2023 |
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R |
2 |
single cell RNAseq analysis of HFpEF mice model |
Feb 01, 2023 |
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R |
9 |
Cell type enrichment analysis using gene signatures and cluster markers |
Aug 12, 2022 |
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R |
4 |
Gene set enrichment data structures and methods |
Oct 27, 2021 |
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R |
2 |
Gene Methylation Enrichment Analysis |
Nov 03, 2023 |
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F# |
7 |
Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis. |
Jul 21, 2022 |
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R |
5 |
single cell Gene co-Expression Network Analysis |
Mar 21, 2023 |
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|
R |
49 |
R package for Protein activity analysis of single-cell RNAseq. |
May 11, 2023 |
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None |
3 |
R package for Protein activity analysis of single-cell RNAseq. |
Oct 23, 2023 |
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Jupyter Notebook |
2 |
Python interface to Reactome's gene set enrichment analysis service |
May 03, 2022 |
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Nextflow |
59 |
A single-cell RNAseq pipeline for 10X genomics data |
Jul 27, 2022 |
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R |
22 |
Differential gene expression analysis and pathway analysis of RNAseq data |
Apr 19, 2022 |
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|
Dockerfile |
2 |
An environment for single-cell RNAseq |
Feb 13, 2023 |
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Scala |
3 |
Gene-List Network Enrichment Analysis |
Nov 25, 2020 |
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Perl |
2 |
Basic analysis of bacterial RNAseq data for differential gene expression |
Sep 13, 2022 |
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|
HTML |
3 |
Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3 |
Apr 14, 2019 |
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Python |
13 |
Tools for generating single-cell gene expression data |
Mar 10, 2023 |
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Python |
4 |
Tool for group biology estimation in single-cell RNAseq data |
Dec 18, 2022 |
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Python |
2 |
Negative binomial matrix factorization from single-cell RNAseq data |
May 19, 2021 |
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|
Python |
29 |
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data |
Sep 18, 2022 |
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|
Python |
110 |
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data |
May 10, 2023 |
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Python |
2 |
classification of single cell RNAseq results |
Jan 29, 2022 |
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Python |
3 |
single-cell RNAseq ATACseq processing pipeline |
Sep 19, 2021 |
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|
R |
20 |
Inferring gene co-expression networks from single cell gene expression data |
Feb 07, 2023 |
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Jupyter Notebook |
4 |
Primers for single-cell data analysis |
Feb 16, 2023 |
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|
Jupyter Notebook |
3 |
single cell data analysis for rms |
Jan 31, 2023 |
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|
Matlab |
2 |
Scripts used for single-cell RNAseq analysis and RNAscope analysis of the Dorsal Horn project. |
Nov 26, 2018 |
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|
R |
12 |
Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles |
Apr 13, 2022 |
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R |
25 |
Single cell data integrative analysis |
Apr 18, 2023 |
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Python |
3 |
Distributed single-cell data analysis. |
Apr 18, 2023 |
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|
Python |
108 |
A scalable SCENIC workflow for single-cell gene regulatory network analysis |
Apr 19, 2023 |
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|
Python |
2 |
PARAFAC2 for modeling multi-sample single-cell RNAseq. |
Mar 13, 2024 |
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|
HTML |
15 |
🧬 The ✨ new (not-yet-official) ✨ (Gene-) Set Enrichment Analysis. |
Apr 13, 2023 |
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|
Python |
2 |
Gene ontology enrichment analysis using protein expression. |
Nov 22, 2022 |
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|
Python |
8 |
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data |
Oct 04, 2022 |
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|
Jupyter Notebook |
4 |
Tools for mechanistic gene network inference from single-cell data |
May 01, 2023 |
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|
MATLAB |
3 |
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) |
Oct 14, 2020 |
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Jupyter Notebook |
2 |
Single-cell topics modeling using deep learning and multi-omics enrichment analysis. |
Aug 06, 2022 |