|
|
Python |
3 |
single-cell RNAseq ATACseq processing pipeline |
Sep 19, 2021 |
|
|
Shell |
2 |
Processing CITE-seq and cell hashing datasets with Cell Ranger |
Apr 28, 2024 |
|
|
R |
5 |
iterative clustering pipeline of big single cell datasets. |
Mar 21, 2023 |
|
|
Jupyter Notebook |
16 |
Central repository for my distributions figures |
Feb 27, 2022 |
|
|
Python |
2 |
Snakemake pipeline for processing ultra-long ONT datasets. |
May 12, 2022 |
|
|
Python |
5 |
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks. |
Jan 04, 2022 |
|
|
Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
|
|
JavaScript |
2 |
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org |
Mar 29, 2022 |
|
|
JavaScript |
94 |
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org |
Mar 30, 2023 |
|
|
None |
2 |
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org |
Dec 04, 2023 |
|
|
C++ |
48 |
A Python package for visualising 2D CFD datasets. |
Jan 06, 2023 |
|
|
Python |
13 |
A text processing pipeline for turning unstructured text data into hierarchical datasets |
Jan 15, 2023 |
|
|
Jupyter Notebook |
4 |
Notebooks for reproducing figures in the cell variance paper |
May 16, 2023 |
|
|
Jupyter Notebook |
7 |
Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across … |
Aug 10, 2022 |
|
|
Nextflow |
14 |
A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol. |
Apr 08, 2022 |
|
|
Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
|
|
Python |
2 |
Command-line tool and python library for visualising small 3D datasets |
Jan 28, 2023 |
|
|
Nextflow |
10 |
Nextflow pipeline wrapper for executing Cell Ranger |
Mar 08, 2022 |
|
|
Python |
2 |
File Ingest Pipeline for Single Cell Portal |
May 31, 2022 |
|
|
Groovy |
8 |
Pipeline for analysing 10X single cell data |
Sep 30, 2020 |
|
|
R |
2 |
Analysis Pipeline for Single Cell ATAC-seq |
Jul 30, 2022 |
|
|
Python |
68 |
Tools for single-cell data processing |
Aug 12, 2022 |
|
|
R |
2 |
This pipeline contains the data processing steps used for Thuy Ngo's 2019 cell-free RNA manuscript |
Feb 17, 2023 |
|
|
R |
19 |
Tools for reading, visualising and processing Magnetic Resonance Spectroscopy data |
Mar 21, 2023 |
|
|
R |
12 |
Single Cell multimodal data scripts for downloading datasets |
Sep 26, 2022 |
|
|
Jupyter Notebook |
89 |
Models and datasets for perturbational single-cell omics |
Apr 18, 2023 |
|
|
Python |
2 |
Pipeline for GLAD tile processing |
Mar 03, 2021 |
|
|
Shell |
11 |
Processing pipeline for GLEAM-X |
Mar 29, 2023 |
|
|
Python |
2 |
Data processing pipeline for tRNAviz |
Nov 09, 2022 |
|
|
Python |
2 |
Processing pipeline for GLEAM-X |
May 06, 2023 |
|
|
IDL |
2 |
Pipeline for processing SST data |
Feb 07, 2023 |
|
|
Jupyter Notebook |
4 |
Data analysis using the vampire models for immune cell receptor distributions |
Jun 22, 2021 |
|
|
Jupyter Notebook |
7 |
GTFS Data Pipeline for TfNSW Bus Datasets |
Jun 15, 2022 |
|
|
Python |
2 |
Nuclei Instance Segmentation Pipeline for Histopathology Datasets |
Apr 27, 2023 |
|
|
R |
9 |
Repository for CCBR single cell RNA-Seq pipeline |
Jun 16, 2022 |
|
|
Python |
9 |
Pipeline for analysis of Dropseq single cell data |
May 31, 2022 |
|
|
HTML |
7 |
wrapper for single cell transcriptomics pipeline with kallisto |
Oct 02, 2020 |
|
|
Nextflow |
2 |
Comprehensive pipeline for donor demultiplexing in single cell |
May 11, 2023 |
|
|
Python |
6 |
Text pre-processing for NLP datasets |
Jun 22, 2022 |
|
|
Scala |
2 |
CI worker for processing RiverBench datasets |
Apr 29, 2023 |
|
|
Jupyter Notebook |
3 |
Data processing for the Cell Painting data from the Cell Health experiments |
Mar 28, 2023 |
|
|
R |
2 |
Code to do data processing and create figures for "The geography of recent genetic ancestry … |
May 03, 2022 |
|
|
R |
15 |
Code to do data processing and create figures for "The geography of recent genetic ancestry … |
Jan 27, 2022 |
|
|
Matlab |
3 |
Scripts for processing datasets for the Harmonizome |
Mar 25, 2019 |
|
|
Python |
5 |
Pipeline for evented multidimensional data processing |
Sep 29, 2021 |
|
|
R |
6 |
Data processing pipeline for PRISM MTS |
Aug 02, 2022 |
|
|
Python |
2 |
Snakemake pipeline for processing fiberseq data |
Feb 06, 2023 |
|
|
C++ |
2 |
An image processing pipeline for ROS. |
Apr 05, 2023 |
|
|
Rust |
2 |
Processing tools and pipeline for JunoCam |
Feb 22, 2022 |
|
|
Go |
3 |
audio processing & conversion pipeline for disgo |
Aug 07, 2022 |