|
Python |
3 |
Python Ensembl Gene Annotation code source repository |
Apr 19, 2022 |
|
Nextflow |
2 |
Plasmid assembly, gene identification and annotation pipeline |
May 16, 2022 |
|
Perl |
4 |
Microbial annotation pipeline - in progress |
Jan 27, 2023 |
|
Groovy |
13 |
A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. |
Sep 15, 2022 |
|
Perl |
12 |
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run … |
Jan 07, 2022 |
|
Perl |
57 |
*DEPRECATED* Job management for the Ensembl Genebuild pipeline |
Jul 21, 2022 |
|
None |
4 |
Declarative pipeline for the Gene Ontology. |
Feb 17, 2022 |
|
Python |
4 |
Annotation of gene lists with keyword hits from the NCBI gene database |
Dec 27, 2020 |
|
HTML |
8 |
A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs |
May 08, 2023 |
|
Python |
2 |
A IGV reference genome annotated with Ensembl gene/transcript info |
Jun 27, 2022 |
|
C++ |
2 |
eukaryotic annotation pipeline |
Apr 25, 2022 |
|
Python |
2 |
A Django app for serving the available annotation tracks for Ensembl client. |
Jul 12, 2023 |
|
Prolog |
3 |
Pipeline for Processing German Literary Texts. Work in Progress. |
Apr 15, 2023 |
|
Nextflow |
3 |
Pipelines for gene annotation of pangenomes. |
Apr 02, 2023 |
|
R |
6 |
Build Annotation package by using information from KEGG, NCBI, Ensembl |
Apr 18, 2023 |
|
Perl |
5 |
A eHive Pipeline for loading Ensembl and Ensembl Genomes databases to a MySQL compatible server |
Jan 07, 2022 |
|
Python |
5 |
Locus-to-gene scoring pipeline |
Feb 09, 2022 |
|
Python |
7 |
TIR-element-annotation pipeline. |
Mar 03, 2021 |
|
Python |
8 |
Whole Genome Annotation Pipeline |
Aug 13, 2022 |
|
Python |
209 |
Eukaryotic Genome Annotation Pipeline |
Aug 16, 2022 |
|
Perl |
7 |
Genome annotation pipeline v2 |
Oct 13, 2022 |
|
Shell |
4 |
Metagenomic functional annotation pipeline |
May 22, 2023 |
|
Shell |
2 |
rAMPage: Rapid AMP Annotation and Gene Estimation |
Mar 22, 2022 |
|
R |
15 |
Gene Co-expression Network analysis pipeline |
May 02, 2023 |
|
Python |
42 |
Horizontal gene transfer (HGT) identification pipeline |
May 17, 2023 |
|
Jupyter Notebook |
2 |
Functions using mygene to show gene summaries and gene annotation plots in Jupyter |
Apr 03, 2022 |
|
Python |
2 |
automatic annotation of bHLH gene family in plants |
Apr 29, 2023 |
|
Common Workflow Language |
203 |
NCBI Prokaryotic Genome Annotation Pipeline |
Aug 19, 2022 |
|
Python |
4 |
OGAP: Organelle Genome Annotation Pipeline |
Mar 01, 2023 |
|
Python |
18 |
Variant annotation and merging pipeline |
Feb 23, 2023 |
|
Perl |
3 |
Code to build the ensembl and ensembl genomes marts |
Jun 25, 2021 |
|
Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
|
R |
2 |
single-cell Gene and AnTibody Expression pipeline |
May 24, 2023 |
|
AMPL |
4 |
Provide trained gene prediction parameters for Fungal genome annotation |
Jul 31, 2022 |
|
Python |
2 |
De novo assembly, Differential gene expression, and annotation workflow |
Jul 08, 2022 |
|
Java |
10 |
Annotation and Prediction of Oncogenic Gene Fusions in RNAseq |
Aug 25, 2022 |
|
Python |
2 |
BUSCOlite: simplified conserved marker gene prediction for genome annotation |
Jun 29, 2023 |
|
Python |
2 |
Building ontology pipeline configurations for the Cell Annotation Platform |
Jun 13, 2022 |
|
Shell |
5 |
Small ncRNA annotation pipeline for transcriptomics |
Jan 20, 2022 |
|
Nextflow |
37 |
Simple bacterial assembly and annotation pipeline |
Aug 09, 2022 |
|
None |
40 |
Read Assembly and Annotation Pipeline Tool |
Aug 01, 2022 |
|
Python |
2 |
Functional Annotation and Association Testing Pipeline |
Dec 20, 2022 |
|
Python |
41 |
Generic human DNA variant annotation pipeline |
Apr 27, 2023 |
|
Python |
3 |
Viral Metagenomics Assembly and Annotation Pipeline |
Dec 19, 2022 |
|
Perl |
9 |
The genome annotation service provides automated gene annotation based on the RAST system. This deploys … |
Nov 29, 2022 |
|
Nextflow |
2 |
Pipeline for the identification of (coding) gene structures in draft genomes. |
May 06, 2022 |
|
JavaScript |
4 |
**work in progress** |
Aug 29, 2018 |
|
CMake |
4 |
Work in progress |
Feb 19, 2017 |
|
Rust |
4 |
(Work in progress) |
Sep 28, 2020 |
|
C |
4 |
Work in progress |
Jun 17, 2021 |