|
R |
4 |
A nextflow pipeline for performing bacterial RNA-Seq data analysis. |
Apr 17, 2023 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
R |
30 |
Snakemake based pipeline for RNA-Seq analysis |
Mar 13, 2023 |
|
Nextflow |
4 |
A proof of concept RNA-Seq pipeline with Nextflow |
Dec 20, 2018 |
|
Nextflow |
34 |
A proof of concept RNA-Seq pipeline with Nextflow |
Mar 06, 2023 |
|
Groovy |
3 |
A Nextflow pipeline for single-cell RNA-Seq dataset |
Apr 21, 2024 |
|
Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
|
HTML |
2 |
Nextflow pipeline for ATAC-seq data analysis |
Feb 04, 2023 |
|
Groovy |
51 |
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure. |
Feb 08, 2023 |
|
HTML |
71 |
A simple RNA-Seq differential gene expression pipeline using Nextflow |
May 15, 2023 |
|
Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |
|
Java |
10 |
Unix-based RNA-seq quantification pipeline |
Dec 01, 2021 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
HTML |
3 |
Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification) |
Dec 16, 2022 |
|
HTML |
74 |
Nextflow pipeline for analysis of direct RNA Nanopore reads |
May 10, 2022 |
|
Nextflow |
76 |
RNA-seq analysis pipeline for detection gene-fusions |
Jul 28, 2022 |
|
HTML |
10 |
An example RNA-seq pipeline with Nextflow and using public ENCODE data |
Feb 02, 2022 |
|
Python |
2 |
RNA-Seq NGS Pipeline |
Feb 21, 2023 |
|
R |
18 |
RNA-seq analysis |
Sep 21, 2022 |
|
C++ |
72 |
Pipeline for initial analysis of droplet-based single-cell RNA-seq data |
Jul 07, 2022 |
|
HTML |
2 |
Nextflow pipeline for ChIP-seq data quality controls and analysis |
Apr 04, 2023 |
|
Python |
18 |
Rna-seq pipeline, From FASTQ to differential expression analysis... |
Oct 08, 2020 |
|
Python |
84 |
STAR based ENCODE Long RNA-Seq processing pipeline |
Jun 24, 2022 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
|
Python |
20 |
Bulk RNA-seq analysis. |
Aug 07, 2022 |
|
R |
9 |
RNA-seq analysis scripts |
Apr 04, 2022 |
|
None |
2 |
Automated RNA-Seq Analysis |
Sep 14, 2021 |
|
Nextflow |
4 |
Nextflow pipeline for preprocessing RNA sequencing data. |
Nov 22, 2022 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
Nextflow |
3 |
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis |
Apr 08, 2023 |
|
R |
16 |
DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline |
Apr 09, 2023 |
|
Python |
6 |
Curare - A customizable and reproducible analysis pipeline for RNA-Seq experiments |
Mar 06, 2023 |
|
wdl |
26 |
ENCODE long read RNA-seq pipeline |
Aug 09, 2022 |
|
R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
|
Python |
25 |
Zavolan-Lab Automated RNA-Seq Pipeline |
Apr 10, 2023 |
|
Python |
5 |
Epitope discovery pipeline for RNA-seq |
Jan 25, 2020 |
|
Nextflow |
21 |
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools |
Nov 23, 2022 |
|
R |
260 |
Differential analysis of RNA-Seq |
Aug 17, 2022 |
|
R |
7 |
Scripts for RNA seq analysis |
Apr 15, 2022 |
|
Python |
16 |
scripts for RNA-Seq analysis |
Mar 06, 2023 |
|
Shell |
2 |
semi automatic RNA-Seq analysis |
Jan 20, 2023 |
|
R |
3 |
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq. |
Jan 20, 2022 |
|
Python |
4 |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline |
Apr 13, 2023 |
|
HCL |
5 |
Nextflow pipeline for nanocompore analysis |
May 04, 2023 |
|
Nextflow |
2 |
Illumina Analysis Pipeline in Nextflow |
Jul 25, 2023 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
Shell |
2 |
Yet another Grape RNA-Seq analyses pipeline |
Jun 03, 2018 |