|
HTML |
29 |
Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses |
May 06, 2022 |
|
Nextflow |
9 |
gatk4 RNA variant calling pipeline |
Aug 02, 2022 |
|
wdl |
3 |
Workflows used for processing whole genome sequence data + germline variant calling. |
Jul 19, 2022 |
|
Nextflow |
7 |
Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices |
Dec 11, 2021 |
|
Nextflow |
2 |
Germline structural variant calling pipeline for short read WGS datasets |
Jul 13, 2023 |
|
HTML |
2 |
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data. |
Aug 01, 2020 |
|
Python |
931 |
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis |
May 19, 2023 |
|
Nextflow |
186 |
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS … |
Aug 16, 2022 |
|
R |
2 |
Wrapper and analysis scripts for RNA variant calling pipeline |
Nov 19, 2023 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
Python |
84 |
STAR based ENCODE Long RNA-Seq processing pipeline |
Jun 24, 2022 |
|
wdl |
48 |
Workflows for processing RNA data for germline short variant discovery with GATK v4 and related … |
Apr 26, 2023 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
Python |
2 |
RNA-Seq NGS Pipeline |
Feb 21, 2023 |
|
Python |
3 |
RNA seq analysis pipeline |
Nov 07, 2022 |
|
Shell |
4 |
H3A variant calling pipeline |
Apr 20, 2021 |
|
wdl |
46 |
Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related … |
Apr 14, 2023 |
|
Shell |
3 |
ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell |
Jun 07, 2022 |
|
C++ |
3 |
Processing of raw Strand-seq data as part of the SV calling pipeline |
Jul 06, 2022 |
|
Python |
2 |
variant calling and processing |
Apr 27, 2022 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
|
Shell |
2 |
Hashed scRNA-seq data processing pipeline |
Mar 30, 2022 |
|
Jupyter Notebook |
4 |
A bioinformatic variant calling pipeline |
Aug 24, 2017 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
Nextflow |
14 |
A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol. |
Apr 08, 2022 |
|
C |
3 |
A pre-processing toolkit for 5mC calling from HBS-seq data. |
Jun 03, 2022 |
|
Python |
28 |
Pipeline to call neoantigens from intron retention events derived from RNA-Seq data. |
Jan 18, 2023 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
Python |
18 |
Rna-seq pipeline, From FASTQ to differential expression analysis... |
Oct 08, 2020 |
|
R |
3 |
Post-processing pipeline for next-generation circulating methylome data generated by cfMeDIP-seq |
Mar 01, 2023 |
|
wdl |
44 |
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best … |
Jan 28, 2023 |
|
wdl |
2 |
This WDL pipeline implements data pre-processing and initial variant calling according to the GATK Best … |
Aug 08, 2019 |
|
Nextflow |
2 |
A pipeline for processing calling cards data |
Aug 06, 2023 |
|
Python |
3 |
scNavigator processing pipeline for scRNA-seq data |
Aug 16, 2023 |
|
Shell |
2 |
Pipeline for gecco RNA-seq analysis |
Oct 05, 2021 |
|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
wdl |
26 |
ENCODE long read RNA-seq pipeline |
Aug 09, 2022 |
|
R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
|
Python |
25 |
Zavolan-Lab Automated RNA-Seq Pipeline |
Apr 10, 2023 |
|
Python |
5 |
Epitope discovery pipeline for RNA-seq |
Jan 25, 2020 |
|
Java |
10 |
Unix-based RNA-seq quantification pipeline |
Dec 01, 2021 |
|
C |
10 |
TOPMed Freeze 3 variant calling pipeline |
Nov 24, 2021 |
|
Shell |
20 |
Variant Calling Pipeline in Cromwell/WDL |
Nov 13, 2020 |
|
Python |
35 |
EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data. |
Jul 25, 2022 |
|
Perl |
4 |
A convenient pipeline for processing of multi-strain bacterial RNA-Seq experiments |
May 15, 2023 |
|
R |
4 |
A nextflow pipeline for performing bacterial RNA-Seq data analysis. |
Apr 17, 2023 |
|
R |
10 |
Processing scRNA-seq data with kallisto|bustools pipeline |
Dec 08, 2022 |
|
Nextflow |
5 |
GENE-SWitCH project RNA-Seq analysis pipeline |
Jun 14, 2022 |
|
R |
9 |
RNA-seq, QC and differential analysis pipeline |
Aug 15, 2022 |