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R |
2 |
single cell RNAseq analysis of HFpEF mice model |
Feb 01, 2023 |
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R |
24 |
Gene set enrichment analysis for single-cell RNAseq data |
May 17, 2023 |
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Jupyter Notebook |
6 |
UCLA T32 Single-Cell Analysis Workshop |
Apr 01, 2022 |
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|
None |
4 |
Single-cell analysis workshop at HKU |
Jun 14, 2023 |
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|
R |
49 |
R package for Protein activity analysis of single-cell RNAseq. |
May 11, 2023 |
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None |
3 |
R package for Protein activity analysis of single-cell RNAseq. |
Oct 23, 2023 |
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Dockerfile |
2 |
An environment for single-cell RNAseq |
Feb 13, 2023 |
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Python |
2 |
classification of single cell RNAseq results |
Jan 29, 2022 |
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Python |
3 |
single-cell RNAseq ATACseq processing pipeline |
Sep 19, 2021 |
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R |
31 |
simpler single cell RNAseq data clustering |
Dec 14, 2022 |
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R |
2 |
simpler single cell RNAseq data Visualization |
Jul 13, 2022 |
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R |
41 |
Inference of cell-cell communication from single-cell RNAseq data |
Apr 06, 2023 |
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wdl |
12 |
Reproducible Workflows, curated at the Fred Hutch |
Feb 07, 2023 |
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HTML |
7 |
RNAseq analysis in R workshop |
Apr 01, 2022 |
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R |
9 |
Workflow for the analysis fo single-cell RNASeq data using R/bioconductor |
Nov 07, 2022 |
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Matlab |
2 |
Scripts used for single-cell RNAseq analysis and RNAscope analysis of the Dorsal Horn project. |
Nov 26, 2018 |
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Python |
2 |
PARAFAC2 for modeling multi-sample single-cell RNAseq. |
Mar 13, 2024 |
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Jupyter Notebook |
36 |
identifying disease critical cell types and programs from single cell RNAseq |
Jun 01, 2023 |
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Python |
29 |
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data |
Sep 18, 2022 |
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Python |
110 |
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data |
May 10, 2023 |
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Nextflow |
59 |
A single-cell RNAseq pipeline for 10X genomics data |
Jul 27, 2022 |
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R |
4 |
Deterministic annealing gaussian mixtures models for single cell RNAseq |
Apr 03, 2023 |
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Python |
2 |
Negative binomial matrix factorization from single-cell RNAseq data |
May 19, 2021 |
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|
HTML |
5 |
Blog for the Fred Hutch Bioinformatics and Data Science Cooperative |
Jan 27, 2023 |
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R |
2 |
Single Cell Analysis Operations |
Aug 12, 2022 |
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Python |
43 |
Single Cell Analysis Pipelines |
Aug 09, 2022 |
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Jupyter Notebook |
5 |
Vector representations of gene co-expression in single cell RNAseq. |
Jul 27, 2022 |
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Python |
4 |
Tool for group biology estimation in single-cell RNAseq data |
Dec 18, 2022 |
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Python |
40 |
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis |
Apr 24, 2023 |
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MATLAB |
3 |
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) |
Oct 14, 2020 |
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Python |
25 |
Algorithms for single-cell analysis |
Oct 21, 2022 |
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R |
25 |
Single cell data integrative analysis |
Apr 18, 2023 |
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Python |
17 |
Single Cell Analysis Automated Workflow |
Aug 02, 2022 |
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|
Python |
25 |
Spatial Single-Cell Analysis Toolkit |
Jun 29, 2022 |
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R |
34 |
Single-cell Case Control Analysis |
Jul 11, 2022 |
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JavaScript |
19 |
Single cell analysis in Javascript |
Apr 27, 2023 |
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Python |
3 |
Distributed single-cell data analysis. |
Apr 18, 2023 |
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R |
75 |
Metacell - Single-cell mRNA Analysis |
Apr 10, 2023 |
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|
HTML |
13 |
single cell sequencing analysis tutorial |
Jun 02, 2022 |
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Python |
8 |
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data |
Oct 04, 2022 |
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|
Jupyter Notebook |
4 |
An R package to robustly identify subpopulations in single-cell RNASeq data. |
Sep 30, 2020 |
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|
HTML |
3 |
Module 4 for HKU Single-cell Workshop |
Mar 15, 2022 |
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|
HTML |
19 |
HSCI/Catalyst Single-cell RNA-Seq Workshop |
Aug 29, 2022 |
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|
HTML |
4 |
Functional analysis of single-cell transcriptomics |
Sep 19, 2022 |
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|
Python |
22 |
Single-cell fluorescence microscopy data analysis |
Mar 22, 2023 |
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|
HTML |
82 |
Single cell RNA sequencing analysis course |
Aug 16, 2022 |
|
|
Python |
203 |
Spatial Single Cell Analysis in Python |
Jun 03, 2022 |
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|
R |
4 |
OHSU-ONPRC Single-cell Analysis Package |
Jan 14, 2021 |
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|
JavaScript |
107 |
Single cell analysis in the browser |
Apr 26, 2023 |
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Java |
19 |
ASAP : Automated Single-cell Analysis Pipeline |
Jan 27, 2023 |