|
R |
3 |
Experiment Data Package for TCGA processed RNA-Seq data |
Dec 10, 2020 |
|
R |
3 |
Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data |
Oct 27, 2021 |
|
Jupyter Notebook |
4 |
Tutorial on working with TCGA mass-spec proteomics (and RNA-seq) data. |
Jul 04, 2022 |
|
Python |
45 |
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy. |
Aug 17, 2022 |
|
C++ |
6 |
Copy number variation detection using NGS data. |
Aug 04, 2022 |
|
Shell |
32 |
Digital Expression Explorer 2 (DEE2): a repository of uniformly processed RNA-seq data |
Jun 27, 2022 |
|
R |
24 |
Integrated copy number variation detection toolset |
Nov 28, 2022 |
|
None |
12 |
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition. |
Jan 29, 2021 |
|
Python |
26 |
HiC for copy Number variation and Translocation detection |
Nov 22, 2022 |
|
R |
2 |
Interpretation of RNA-seq data |
Apr 04, 2022 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
None |
6 |
Identify copy number variation in bacterial Illumina sequences |
Sep 07, 2020 |
|
Jupyter Notebook |
2 |
Single nuclei RNA-seq oxytocin data |
Mar 05, 2022 |
|
HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
|
CSS |
20 |
Workshop • Analysis of RNA-seq data |
Jul 18, 2022 |
|
Python |
3 |
Find circRNAs in RNA-seq data. |
Feb 02, 2022 |
|
Python |
12 |
Find circRNAs in RNA-seq data. |
Jul 12, 2022 |
|
R |
16 |
A/B compartments for 12 cancer types estimated from TCGA methylation data |
Jun 26, 2022 |
|
Python |
4 |
Single-cell RNA-seq data analysis and visualization |
Jun 12, 2022 |
|
R |
6 |
Preprocessing, analyzing, and reporting of RNA-seq data |
Aug 08, 2022 |
|
C |
197 |
TCR and BCR assembly from RNA-seq data |
May 13, 2023 |
|
Python |
5 |
Data and scripts for Widespread natural variation of DNA methylation within angiosperms |
Jan 28, 2023 |
|
Java |
17 |
HadoopCNV is a MapReduce-based copy number variation caller for genome sequencing data |
Mar 06, 2022 |
|
Jupyter Notebook |
4 |
This repo stores codes for the analysis of tasrkleat results on TCGA RNA-Seq dataa |
Sep 13, 2021 |
|
Python |
2 |
Benzimidazole RNA-Seq and smRNA-Seq Pipeline |
May 28, 2020 |
|
HTML |
2 |
script for RNA-seq and Chip-seq |
Apr 17, 2021 |
|
R |
3 |
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice … |
Aug 16, 2022 |
|
R |
3 |
R package: Parent-specific Copy-number Estimation Pipeline using HT-Seq Data |
Feb 20, 2021 |
|
HTML |
6 |
A comprehensive analysis tool for Ribo-seq and small RNA-seq data |
May 02, 2022 |
|
R |
6 |
One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data |
Aug 10, 2022 |
|
C# |
6 |
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data |
Mar 02, 2022 |
|
R |
3 |
A workflow for exploring and analyzing RNA-seq data. |
Dec 07, 2021 |
|
R |
5 |
Splice event prediction and quantification from RNA-seq data |
Feb 18, 2023 |
|
Jupyter Notebook |
3 |
Analysis of RNA-seq recompute expression data |
Aug 24, 2017 |
|
Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
Python |
5 |
Milne Lab ChIP-seq, ATAC-seq and RNA-seq pipeline |
Mar 31, 2023 |
|
R |
6 |
V-SVA: An R Shiny application for detecting and annotating hidden sources of variation in single … |
Feb 25, 2022 |
|
HTML |
15 |
Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy … |
Nov 01, 2021 |
|
R |
3 |
Analysis of differential RNA splicing from RNA-seq time series data |
May 10, 2017 |
|
R |
16 |
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set |
May 28, 2020 |
|
R |
16 |
Peak calling and differential methylation for MeRIP-Seq |
Mar 10, 2023 |
|
R |
2 |
Calculating the number of cells in single cell RNA-seq experiments |
Jul 19, 2019 |
|
R |
4 |
A tutorial to perform RNA-Seq data processing and analysis |
Apr 15, 2022 |
|
Python |
6 |
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor |
Jul 28, 2022 |
|
None |
2 |
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor |
Jun 10, 2023 |
|
R |
18 |
ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq … |
Apr 26, 2023 |
|
TeX |
2 |
Analysis of single cell RNA-seq data course |
Sep 25, 2019 |
|
Python |
2 |
Analysis of melanoma signatures from RNA seq data |
Oct 23, 2020 |
|
R |
31 |
Estimation of Promoter Activity from RNA-Seq data |
Jul 23, 2022 |