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R |
3 |
Experiment Data Package for TCGA processed RNA-Seq data |
Dec 10, 2020 |
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Jupyter Notebook |
3 |
Analysis of RNA-seq recompute expression data |
Aug 24, 2017 |
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Python |
155 |
Differential expression analysis for single-cell RNA-seq data. |
Apr 06, 2023 |
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None |
2 |
Differential expression analysis for single-cell RNA-seq data |
Apr 14, 2021 |
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R |
9 |
Differential expression analysis for single-cell RNA-seq data |
Nov 15, 2022 |
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Python |
12 |
Normalization of RNA-seq gene expression |
Apr 21, 2023 |
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R |
3 |
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data |
Oct 31, 2022 |
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Python |
32 |
A fully automated gene annotator from RNA-Seq expression data |
May 13, 2022 |
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None |
38 |
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project |
Aug 28, 2022 |
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R |
6 |
Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA |
Jun 27, 2022 |
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None |
8 |
A treatise on quantification and differential expression from RNA-seq data |
Nov 05, 2015 |
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Python |
80 |
phasing and Allele Specific Expression from RNA-seq |
Oct 11, 2022 |
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C++ |
348 |
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data |
Apr 27, 2023 |
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R |
16 |
DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline |
Apr 09, 2023 |
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Python |
18 |
Rna-seq pipeline, From FASTQ to differential expression analysis... |
Oct 08, 2020 |
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R |
2 |
Interpretation of RNA-seq data |
Apr 04, 2022 |
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Perl |
19 |
circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data |
Aug 11, 2022 |
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R |
101 |
Code for evaluation of differential expression methods in single-cell RNA-seq data |
Feb 15, 2023 |
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Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
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None |
57 |
RNA-seq workflow: gene-level exploratory analysis and differential expression |
Apr 27, 2023 |
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HTML |
71 |
A simple RNA-Seq differential gene expression pipeline using Nextflow |
May 15, 2023 |
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Python |
8 |
The gEAR Portal was created as a data archive and viewer for gene expression data … |
Jan 17, 2023 |
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R |
4 |
ISCB DC RSG 2016 Workshop Presentation: Co-expression network analysis using RNA-Seq data |
Feb 02, 2022 |
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Jupyter Notebook |
2 |
Single nuclei RNA-seq oxytocin data |
Mar 05, 2022 |
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HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
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CSS |
20 |
Workshop • Analysis of RNA-seq data |
Jul 18, 2022 |
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Python |
3 |
Find circRNAs in RNA-seq data. |
Feb 02, 2022 |
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Python |
12 |
Find circRNAs in RNA-seq data. |
Jul 12, 2022 |
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C++ |
96 |
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on … |
Mar 30, 2023 |
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OpenEdge ABL |
3 |
A repository for research work involving topic modeling RNA-seq data. |
Aug 02, 2019 |
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R |
60 |
A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth. |
Mar 02, 2023 |
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R |
21 |
R package for DER Finder, a method for differential expression analysis of RNA-seq data |
May 23, 2022 |
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Perl |
10 |
Code base for profiling highly replicated differential gene expression RNA-seq. |
Jan 09, 2023 |
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R |
9 |
Single cell analysis tools for expression from RNA-seq in R |
Feb 10, 2024 |
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C# |
6 |
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data |
Mar 02, 2022 |
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Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
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Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
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C |
1305 |
RNA-seq aligner |
Aug 17, 2022 |
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Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
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Shell |
3 |
RNA-seq analyses. |
May 16, 2022 |
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R |
18 |
RNA-seq analysis |
Sep 21, 2022 |
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C |
3 |
RNA-seq aligner |
Jul 20, 2020 |
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C++ |
8 |
RNA-Seq sampling |
Mar 13, 2023 |
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R |
3 |
An R package to create gene expression atlases from bulk RNA-seq data on NCBI SRA |
May 22, 2024 |
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R |
3 |
Analysis of differential RNA splicing from RNA-seq time series data |
May 10, 2017 |
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R |
3 |
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq. |
Jan 20, 2022 |
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Python |
2 |
Best practices, scripts and workflows for performing bulk RNA-seq expression analyses |
Jul 27, 2023 |
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R |
16 |
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set |
May 28, 2020 |
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R |
9 |
Repository for CCBR single cell RNA-Seq pipeline |
Jun 16, 2022 |
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Python |
22 |
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation: |
Apr 12, 2024 |