|
|
JavaScript |
7 |
Diffusion MRI Quality Check in python |
Oct 17, 2022 |
|
|
Nextflow |
40 |
TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity |
Apr 20, 2023 |
|
|
Python |
17 |
An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images |
Aug 17, 2022 |
|
|
HTML |
2 |
Nextflow pipeline for ChIP-seq data quality controls and analysis |
Apr 04, 2023 |
|
|
Dockerfile |
2 |
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower |
Apr 16, 2023 |
|
|
HTML |
2 |
Nextflow pipeline for quality controls and trimming of raw sequencing data |
Mar 21, 2023 |
|
|
Nextflow |
3 |
Nextflow pipeline for CNest |
Mar 31, 2022 |
|
|
MATLAB |
4 |
Deconvolution algorithms for diffusion MRI |
Dec 03, 2021 |
|
|
Python |
29 |
Pipeline and tools for estimating human connectomes from Diffusion, Structural, and Functional MRI |
Jan 28, 2023 |
|
|
Matlab |
12 |
MRI preprocessing pipeline |
Nov 24, 2022 |
|
|
HCL |
5 |
Nextflow pipeline for nanocompore analysis |
May 04, 2023 |
|
|
Groovy |
24 |
A Nextflow pipeline to identify quality control issues with new sequencing data. |
Apr 05, 2023 |
|
|
C++ |
80 |
A Tractography Tool for Diffusion MRI |
Aug 22, 2022 |
|
|
Nextflow |
9 |
Mutect pipeline with Nextflow |
Jul 19, 2021 |
|
|
Nextflow |
3 |
Nextflow based pipeline for Zika tutorial |
Dec 15, 2021 |
|
|
Nextflow |
2 |
Nanopore pipeline for DPIRD - uses Nextflow |
Mar 29, 2021 |
|
|
None |
7 |
IARC nextflow course for pipeline users |
Jul 27, 2020 |
|
|
Makefile |
3 |
Nextflow pipeline for Illumina NGS demultiplexing |
Jun 06, 2022 |
|
|
Shell |
5 |
A nextflow/singularity pipeline for quandenser |
Jun 25, 2022 |
|
|
Python |
3 |
Image quality assessment for fetal MRI |
Nov 30, 2022 |
|
|
Python |
2 |
A tool to predict quality control (QC) ratings for preprocessed diffusion MRI data from QSIPrep … |
Feb 01, 2023 |
|
|
Nextflow |
4 |
Nextflow pipeline for preparatory analyses for Whale |
Sep 23, 2022 |
|
|
None |
3 |
pipeline tool for mouse MRI analysis |
Apr 03, 2023 |
|
|
R |
3 |
A Nextflow DSL2 pipeline to perform ribo-seq data analysis and comprehensive quality control. |
Mar 13, 2024 |
|
|
Groovy |
5 |
scsHi-C preprocessing Nextflow pipeline |
Apr 28, 2022 |
|
|
Nextflow |
2 |
Illumina Analysis Pipeline in Nextflow |
Jul 25, 2023 |
|
|
Python |
2 |
Single cell Nextflow cellbender pipeline. |
Sep 22, 2023 |
|
|
Nextflow |
2 |
ProteomeGenomics Database Creation - Nextflow Pipeline |
Jun 29, 2023 |
|
|
HTML |
3 |
Nextflow pipeline for RNA-seq pre-analysis (quality controls, genes/isoforms expression, isoform de-novo identification) |
Dec 16, 2022 |
|
|
Julia |
11 |
Diffusion MRI Simulation Toolbox in Julia |
May 07, 2022 |
|
|
MATLAB |
14 |
Diffusion MRI Simulation Toolbox in Matlab |
Mar 15, 2022 |
|
|
HTML |
83 |
Preprocessing and reconstruction of diffusion MRI |
Aug 01, 2022 |
|
|
Nextflow |
10 |
Nextflow pipeline wrapper for executing Cell Ranger |
Mar 08, 2022 |
|
|
HTML |
2 |
Nextflow pipeline for ATAC-seq data analysis |
Feb 04, 2023 |
|
|
Nextflow |
4 |
Nextflow pipeline for ABRA (Assembly Based ReAligner) |
Jun 09, 2021 |
|
|
Nextflow |
2 |
nextflow pipeline for Mycobacterium bovis pangenome analysis. |
Nov 25, 2022 |
|
|
Nextflow |
4 |
Nextflow pipeline for preprocessing RNA sequencing data. |
Nov 22, 2022 |
|
|
Nextflow |
3 |
Nextflow pipeline for CNV calling with PURPLE |
Jun 24, 2023 |
|
|
Python |
8 |
Deep learning for MRI registration quality control |
Jun 08, 2020 |
|
|
Python |
77 |
Common workflows for MRI (anatomical, functional, diffusion, etc) |
Apr 03, 2023 |
|
|
Nextflow |
4 |
A simple fastp-MultiQC nextflow pipeline |
Jul 13, 2022 |
|
|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
|
|
Nextflow |
8 |
A basic blast pipeline using nextflow |
Mar 06, 2023 |
|
|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
|
|
Nextflow |
30 |
Deep Variant as a Nextflow pipeline |
Jan 06, 2022 |
|
|
Python |
2 |
A nextflow pipeline to run Fluffy |
Sep 28, 2023 |
|
|
Jupyter Notebook |
2 |
Educational course presentation about diffusion MRI models |
Mar 21, 2018 |
|
|
Nextflow |
4 |
Nextflow pipeline for BWA, BWA2 and STAR alignments |
May 07, 2022 |
|
|
Nextflow |
3 |
Nextflow pipeline for Targeted-Learning of genetic effects |
Jan 19, 2023 |
|
|
R |
2 |
a shiny frontend for the nextflow-fastp pipeline |
Jul 06, 2022 |