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Groovy |
3 |
A Nextflow pipeline for single-cell RNA-Seq dataset |
Apr 21, 2024 |
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R |
4 |
Single Cell Pipeline |
Aug 19, 2022 |
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|
Nextflow |
10 |
Nextflow pipeline wrapper for executing Cell Ranger |
Mar 08, 2022 |
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|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
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|
Python |
5 |
Single cell ATAC-Seq Snakemake pipeline |
Sep 25, 2021 |
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|
Python |
3 |
single-cell RNAseq ATACseq processing pipeline |
Sep 19, 2021 |
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|
R |
3 |
A single-cell RNA-seq pipeline |
Apr 20, 2023 |
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|
Java |
19 |
ASAP : Automated Single-cell Analysis Pipeline |
Jan 27, 2023 |
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Python |
2 |
Awesome single-cell CITE-sequencing Pipeline |
Jul 19, 2022 |
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Python |
2 |
snakemake single cell pipeline for CIDC |
Mar 19, 2024 |
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Nextflow |
2 |
modules for processing and analyzing single cell data using Nextflow |
Feb 07, 2023 |
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Python |
6 |
A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation … |
Apr 25, 2023 |
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Python |
2 |
File Ingest Pipeline for Single Cell Portal |
May 31, 2022 |
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|
C |
3 |
Single-cell Transcriptome and Regulome Analysis Pipeline |
Aug 30, 2022 |
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|
C |
4 |
Single-cell Transcriptome and Regulome Analysis Pipeline |
Apr 20, 2022 |
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|
C |
236 |
Single-cell Transcriptome and Regulome Analysis Pipeline |
Apr 17, 2023 |
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|
Groovy |
8 |
Pipeline for analysing 10X single cell data |
Sep 30, 2020 |
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R |
2 |
Analysis Pipeline for Single Cell ATAC-seq |
Jul 30, 2022 |
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Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
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R |
2 |
single-cell Gene and AnTibody Expression pipeline |
May 24, 2023 |
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Nextflow |
5 |
Single cell transcriptome analysis pipeline based on DropEst |
Sep 15, 2020 |
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|
R |
9 |
Repository for CCBR single cell RNA-Seq pipeline |
Jun 16, 2022 |
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Python |
9 |
Pipeline for analysis of Dropseq single cell data |
May 31, 2022 |
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R |
5 |
iterative clustering pipeline of big single cell datasets. |
Mar 21, 2023 |
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|
HTML |
7 |
wrapper for single cell transcriptomics pipeline with kallisto |
Oct 02, 2020 |
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|
Nextflow |
9 |
Sanger Cellular Genetics single-cell ATAC-seq pipeline. |
Mar 28, 2023 |
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|
Nextflow |
2 |
Comprehensive pipeline for donor demultiplexing in single cell |
May 11, 2023 |
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HTML |
3 |
Third-generation single cell sequencing (Pacbio) analysis pipeline. |
Apr 23, 2023 |
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Nextflow |
3 |
Nextflow pipeline for CNest |
Mar 31, 2022 |
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Nextflow |
9 |
Mutect pipeline with Nextflow |
Jul 19, 2021 |
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Mathematica |
5 |
Single-cell RNA sequencing pipeline for quantifying intratumor heterogeneity |
Sep 30, 2020 |
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|
Nextflow |
59 |
A single-cell RNAseq pipeline for 10X genomics data |
Jul 27, 2022 |
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R |
2 |
A single cell transcriptomics based deconvolution pipeline for Leukemia |
Mar 15, 2023 |
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HCL |
5 |
Nextflow pipeline for nanocompore analysis |
May 04, 2023 |
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Groovy |
5 |
scsHi-C preprocessing Nextflow pipeline |
Apr 28, 2022 |
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|
Nextflow |
2 |
Illumina Analysis Pipeline in Nextflow |
Jul 25, 2023 |
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|
Nextflow |
2 |
ProteomeGenomics Database Creation - Nextflow Pipeline |
Jun 29, 2023 |
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|
R |
7 |
A nextflow pipeline to call single nucleotide and structural variants in viral populations |
May 04, 2022 |
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|
HTML |
18 |
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data |
May 14, 2023 |
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|
Nextflow |
7 |
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data |
Apr 21, 2023 |
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|
R |
2 |
A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis |
Mar 09, 2023 |
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|
Jupyter Notebook |
2 |
Pipeline for assembling TCRs from single-cell RNA-seq with TRACER |
May 15, 2021 |
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|
Python |
2 |
Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data |
Oct 10, 2019 |
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|
Nextflow |
4 |
A simple fastp-MultiQC nextflow pipeline |
Jul 13, 2022 |
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|
R |
7 |
ChIP-Seq Pipeline implemented using Nextflow |
Jun 07, 2022 |
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|
Nextflow |
8 |
A basic blast pipeline using nextflow |
Mar 06, 2023 |
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|
Perl |
2 |
Nextflow based RNA-seq analysis pipeline |
Nov 19, 2021 |
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|
Nextflow |
3 |
Nextflow based pipeline for Zika tutorial |
Dec 15, 2021 |
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|
Nextflow |
30 |
Deep Variant as a Nextflow pipeline |
Jan 06, 2022 |
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|
Nextflow |
2 |
Nanopore pipeline for DPIRD - uses Nextflow |
Mar 29, 2021 |