Stars
55
Forks
9
Language
Jupyter Notebook
Last Updated
Jan 18, 2024
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
C | 3 | Single-cell Transcriptome and Regulome Analysis Pipeline | Aug 30, 2022 | |
C | 4 | Single-cell Transcriptome and Regulome Analysis Pipeline | Apr 20, 2022 | |
C | 236 | Single-cell Transcriptome and Regulome Analysis Pipeline | Apr 17, 2023 | |
R | 5 | single cell transcriptome workshop in Krumlov, Jan 2018 | Sep 14, 2019 | |
Nextflow | 5 | Single cell transcriptome analysis pipeline based on DropEst | Sep 15, 2020 | |
Jupyter Notebook | 8 | The C. elegans transcriptome at single cell resolution | Apr 13, 2022 | |
Python | 25 | Spatial Single-Cell Analysis Toolkit | Jun 29, 2022 | |
Jupyter Notebook | 6 | Spatial Single Cell transcriptomic library | Jul 14, 2023 | |
Python | 203 | Spatial Single Cell Analysis in Python | Jun 03, 2022 | |
R | 54 | Finding surprising needles (=genes) in haystacks (=single cell transcriptome data). | Sep 29, 2022 | |
Jupyter Notebook | 125 | Spatial alignment of single cell transcriptomic data. | Aug 05, 2022 | |
Jupyter Notebook | 13 | Spatial reconstruction of dissociated single-cell data | Jan 18, 2023 | |
Jupyter Notebook | 9 | SingleCellFusion--a tool to integrate single-cell transcriptome and epigenome data | Mar 01, 2023 | |
C | 3 | Recovery of transcriptome subsets from pooled single cell RNA sequencing libraries | Sep 25, 2022 | |
None | 3 | A web tool for single-cell transcriptome analysis of pathway activation signatures. | Jan 24, 2023 | |
Python | 6 | tools to handle spatial transcriptome data | Jul 18, 2022 | |
Python | 16 | Spatial analysis toolkit for single cell multiplexed tissue data | Jul 29, 2022 | |
Python | 15 | A Python package for single-cell spatial image analysis. | Apr 28, 2023 | |
Python | 14 | A plugin to visualise 3D spatial single cell omics | Jul 20, 2023 | |
HTML | 2 | add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects | Feb 24, 2023 | |
R | 4 | Systematic benchmarking of computational methods for cell- cell communication inference from single-cell or spatial transcriptomics | May 05, 2023 | |
Python | 14 | Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information | Apr 12, 2023 | |
Julia | 2 | A Julia package for single cell and spatial data analysis | May 07, 2023 | |
R | 2 | Luria-Delbruck design, comparing transcriptome, methylome and exome of single-cells to hundreds of single-cell-derived clones | Aug 13, 2020 | |
Python | 197 | Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) | Apr 26, 2023 | |
Python | 2 | This repository will continuously collect annotated spatial single cell transcriptomic datasets. | Mar 21, 2023 | |
Python | 8 | Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data). | Dec 20, 2023 | |
Python | 8 | STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics … | Sep 08, 2022 | |
Python | 15 | STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics … | Apr 14, 2023 | |
Jupyter Notebook | 2 | a program to design padlock probe for spatial transcriptome | Apr 29, 2023 | |
R | 4 | an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo … | May 10, 2022 | |
JavaScript | 5 | Vitessce is a visual integration tool for exploration of spatial single-cell experiments. | Dec 14, 2021 | |
JavaScript | 100 | Vitessce is a visual integration tool for exploration of spatial single-cell experiments. | Apr 28, 2023 | |
JavaScript | 3 | The mono repo for Aquila, the spatial single cell database and analysis platform | Mar 10, 2023 | |
Julia | 2 | ScTenifoldNet.jl: a machine learning workflow for constructing and comparing transcriptome-wide gene regulatory networks from single-cell … | Sep 10, 2020 | |
Jupyter Notebook | 4 | Single cell ATAC-Seq preprocessing for single cell explorer | May 29, 2021 | |
R | 19 | Estimation of Single-Cell Potency with Single Cell Entropy | May 18, 2023 | |
R | 4 | Single Cell Pipeline | Aug 19, 2022 | |
Jupyter Notebook | 9 | Single cell pipelines | Jun 23, 2022 | |
MATLAB | 10 | Single Cell Segmentation | Nov 04, 2021 | |
Python | 37 | Single Cell Transcriptomics | Mar 27, 2023 | |
JavaScript | 2 | Single Cell Navigator | Aug 19, 2022 | |
R | 2 | Single cell codes | May 11, 2023 | |
R | 64 | Cell type prioritization in single-cell data | Apr 18, 2023 | |
HTML | 9 | Build predicted cell-cell interaction networks from single-cell data. | Dec 14, 2022 | |
R | 41 | Inference of cell-cell communication from single-cell RNAseq data | Apr 06, 2023 | |
MATLAB | 4 | Grid cell spatial firing models (Zilli 2012) | Jul 02, 2022 | |
R | 2 | Unsupervised cell type identification for spatial transcriptomics | Jun 29, 2022 | |
R | 2 | Single Cell Analysis Operations | Aug 12, 2022 | |
Python | 2 | Single Cell Predictive Marker | Aug 18, 2022 |