Stars
5
Forks
3
Language
JavaScript
Last Updated
Dec 14, 2021
Similar Repos
Repo | Language | Stars | Description | Updated At |
---|---|---|---|---|
JavaScript | 100 | Vitessce is a visual integration tool for exploration of spatial single-cell experiments. | Apr 28, 2023 | |
JavaScript | 3 | An application to display spatial and single-cell experiment data. Built in React, on the Vitessce … | May 10, 2023 | |
Jupyter Notebook | 45 | spatial transcriptome, single cell | May 03, 2023 | |
Python | 25 | Spatial Single-Cell Analysis Toolkit | Jun 29, 2022 | |
Jupyter Notebook | 6 | Spatial Single Cell transcriptomic library | Jul 14, 2023 | |
Python | 2 | Container class for single-cell experiments | Feb 12, 2024 | |
Python | 203 | Spatial Single Cell Analysis in Python | Jun 03, 2022 | |
Jupyter Notebook | 141 | STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data | Aug 05, 2022 | |
Jupyter Notebook | 125 | Spatial alignment of single cell transcriptomic data. | Aug 05, 2022 | |
Jupyter Notebook | 13 | Spatial reconstruction of dissociated single-cell data | Jan 18, 2023 | |
Jupyter Notebook | 40 | Identify cell barcodes from single-cell genomics sequencing experiments | May 06, 2022 | |
Jupyter Notebook | 106 | Discovering novel cell types across heterogenous single-cell experiments | Apr 07, 2023 | |
Python | 8 | STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics … | Sep 08, 2022 | |
Python | 15 | STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics … | Apr 14, 2023 | |
Scala | 4 | SCIMaul: A read splitter for single-cell experiments | May 22, 2021 | |
Python | 16 | Spatial analysis toolkit for single cell multiplexed tissue data | Jul 29, 2022 | |
Python | 15 | A Python package for single-cell spatial image analysis. | Apr 28, 2023 | |
Rust | 136 | Single-Cell Genotyping Tool | Apr 12, 2023 | |
R | 4 | Systematic benchmarking of computational methods for cell- cell communication inference from single-cell or spatial transcriptomics | May 05, 2023 | |
Julia | 2 | A Julia package for single cell and spatial data analysis | May 07, 2023 | |
Jupyter Notebook | 4 | Open Problems - Multimodal Single-Cell Integration | Nov 24, 2022 | |
R | 3 | Unbiased integration of single cell transcriptomes. | May 26, 2023 | |
Python | 14 | A plugin to visualise 3D spatial single cell omics | Jul 20, 2023 | |
Python | 9 | Multigrate: multiomic data integration for single-cell genomics | Nov 18, 2022 | |
Python | 43 | MultiMAP for integration of single cell multi-omics | Jan 25, 2023 | |
Python | 14 | Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information | Apr 12, 2023 | |
R | 9 | Shiny app for visualization, exploration of mouse brain single cell gene expression | Apr 26, 2022 | |
C++ | 29 | Software for exploration of gene expression data from single-cell RNA sequencing. | May 10, 2022 | |
Python | 67 | Spatial mapping of cell types by integration of transcriptomics data | Apr 27, 2023 | |
TeX | 3 | scforest: a visual overview of single cell technology | Dec 24, 2019 | |
Python | 197 | Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) | Apr 26, 2023 | |
Python | 11 | Accelerated, Python-only, single-cell integration benchmarking metrics | Apr 26, 2023 | |
Python | 15 | Single-cell multi-omics integration using Optimal Transport | Mar 27, 2023 | |
HTML | 46 | A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry … | Mar 24, 2023 | |
Python | 2 | This repository will continuously collect annotated spatial single cell transcriptomic datasets. | Mar 21, 2023 | |
Python | 8 | Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data). | Dec 20, 2023 | |
Julia | 2 | a software package for analysis and exploration of single-cell RNA-seq datasets | Mar 15, 2022 | |
R | 68 | Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR | Apr 21, 2023 | |
Python | 2 | Tool for single-cell Hi-C quality control | May 06, 2020 | |
HTML | 4 | Comparison of multi-omic integration methods for single-cell data. | Aug 07, 2020 | |
JavaScript | 3 | The mono repo for Aquila, the spatial single cell database and analysis platform | Mar 10, 2023 | |
Jupyter Notebook | 4 | Single cell ATAC-Seq preprocessing for single cell explorer | May 29, 2021 | |
R | 10 | Mosaic single cell data integration using non-overlapping features | Mar 14, 2023 | |
HTML | 3 | CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration | May 18, 2023 | |
Python | 29 | Interactive software tool for the assignment of cell types in single-cell studies. | Dec 12, 2022 | |
R | 2 | Calculating the number of cells in single cell RNA-seq experiments | Jul 19, 2019 | |
Python | 147 | Graph-linked unified embedding for single-cell multi-omics data integration | Aug 05, 2022 | |
Python | 12 | A visual exploration and hypothesis testing tool for 3D genomics | May 26, 2023 | |
R | 3 | scBubbletree: quantitative tool for visual exploration of scRNA-seq data | Mar 14, 2023 | |
R | 5 | CMEA: An R package for Systematic Exploration of Single-Cell Morphological Phenotypes from Transcriptomic Profile | Oct 11, 2022 |