|
|
Python |
25 |
Spatial Single-Cell Analysis Toolkit |
Jun 29, 2022 |
|
|
Common Workflow Language |
4 |
CWL toolkit for single-cell sequencing data analysis |
Jan 22, 2023 |
|
|
C |
3 |
Multiplexed Image Three-D Reconstruction and Integrated Cell Spatial -Analysis |
Oct 16, 2023 |
|
|
Julia |
2 |
A Julia package for single cell and spatial data analysis |
May 07, 2023 |
|
|
Python |
203 |
Spatial Single Cell Analysis in Python |
Jun 03, 2022 |
|
|
R |
180 |
R toolkit for the analysis of single-cell chromatin data |
Aug 05, 2022 |
|
|
Python |
9 |
Toolkit for single-cell DNA methylation analysis. |
Aug 09, 2022 |
|
|
R |
12 |
Toolkit for single-cell copy number analysis |
Apr 05, 2023 |
|
|
Python |
197 |
Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model) |
Apr 26, 2023 |
|
|
R |
441 |
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data |
May 10, 2023 |
|
|
Python |
15 |
A Python package for single-cell spatial image analysis. |
Apr 28, 2023 |
|
|
Jupyter Notebook |
125 |
Spatial alignment of single cell transcriptomic data. |
Aug 05, 2022 |
|
|
Jupyter Notebook |
13 |
Spatial reconstruction of dissociated single-cell data |
Jan 18, 2023 |
|
|
Jupyter Notebook |
4 |
Primers for single-cell data analysis |
Feb 16, 2023 |
|
|
Jupyter Notebook |
3 |
single cell data analysis for rms |
Jan 31, 2023 |
|
|
R |
25 |
Single cell data integrative analysis |
Apr 18, 2023 |
|
|
Python |
3 |
Distributed single-cell data analysis. |
Apr 18, 2023 |
|
|
Jupyter Notebook |
45 |
spatial transcriptome, single cell |
May 03, 2023 |
|
|
Jupyter Notebook |
7 |
An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed … |
Feb 07, 2023 |
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|
R |
2 |
A toolkit for validating single-cell analysis with visualization. |
May 25, 2022 |
|
|
Python |
4 |
a python toolkit for single-cell tumor phylogenetic analysis |
Nov 06, 2022 |
|
|
Python |
4 |
Single-cell Graph-based Regulatory Element Analysis Toolkit |
Feb 19, 2023 |
|
|
R |
2 |
Code and scripts used to perform spatial sampling analysis as described in "Optimizing multiplexed imaging … |
Mar 09, 2023 |
|
|
Python |
22 |
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation: |
Apr 12, 2024 |
|
|
Python |
22 |
Single-cell fluorescence microscopy data analysis |
Mar 22, 2023 |
|
|
Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
|
|
R |
3 |
R toolkit for the analysis of single-cell functional heterogeneity |
Apr 12, 2023 |
|
|
Jupyter Notebook |
6 |
Spatial Single Cell transcriptomic library |
Jul 14, 2023 |
|
|
R |
47 |
Toolkit for Single-Cell Velocity |
Apr 27, 2023 |
|
|
Python |
9 |
Pipeline for analysis of Dropseq single cell data |
May 31, 2022 |
|
|
Jupyter Notebook |
3 |
Template repository for standard single-cell data analysis |
Apr 05, 2023 |
|
|
Python |
40 |
BESCA (Beyond Single Cell Analysis) offers python functions for single-cell analysis |
Apr 24, 2023 |
|
|
R |
13 |
comprehensive analysis of single-cell transcriptomics data |
Mar 24, 2023 |
|
|
Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
|
|
None |
2 |
Single cell analysis of the JUMP Cell Painting consortium data |
Apr 11, 2023 |
|
|
JavaScript |
3 |
The mono repo for Aquila, the spatial single cell database and analysis platform |
Mar 10, 2023 |
|
|
R |
1535 |
R toolkit for single cell genomics |
Aug 19, 2022 |
|
|
R |
2 |
R toolkit for single cell genomics |
Oct 28, 2023 |
|
|
Python |
25 |
Algorithms for single-cell analysis |
Oct 21, 2022 |
|
|
Python |
14 |
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information |
Apr 12, 2023 |
|
|
Python |
155 |
Differential expression analysis for single-cell RNA-seq data. |
Apr 06, 2023 |
|
|
None |
2 |
Differential expression analysis for single-cell RNA-seq data |
Apr 14, 2021 |
|
|
Jupyter Notebook |
111 |
A Bayesian model for compositional single-cell data analysis |
Apr 18, 2023 |
|
|
R |
18 |
Shiny app for the analysis of single cell data |
Apr 18, 2023 |
|
|
R |
9 |
Differential expression analysis for single-cell RNA-seq data |
Nov 15, 2022 |
|
|
R |
24 |
Gene set enrichment analysis for single-cell RNAseq data |
May 17, 2023 |
|
|
None |
3 |
Analysis code for lungfish single cell RNA-seq data |
Sep 22, 2023 |
|
|
HTML |
5 |
Central repository for the Multiplexed Tissue Imaging Workshop 2023. |
Apr 10, 2023 |
|
|
R |
2 |
Single Cell Analysis Operations |
Aug 12, 2022 |
|
|
Python |
43 |
Single Cell Analysis Pipelines |
Aug 09, 2022 |