RNAnorm

Normalization of RNA-seq gene expression

Stars

55

Forks

14

Language

Python

Last Updated

May 09, 2024

Similar Repos
Repo Language Stars Description Updated At
Python 32 A fully automated gene annotator from RNA-Seq expression data May 13, 2022
None 57 RNA-seq workflow: gene-level exploratory analysis and differential expression Apr 27, 2023
HTML 71 A simple RNA-Seq differential gene expression pipeline using Nextflow May 15, 2023
Perl 10 Code base for profiling highly replicated differential gene expression RNA-seq. Jan 09, 2023
C++ 348 RSEM: accurate quantification of gene and isoform expression from RNA-Seq data Apr 27, 2023
Nextflow 5 GENE-SWitCH project RNA-Seq analysis pipeline Jun 14, 2022
C++ 96 Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on … Mar 30, 2023
Jupyter Notebook 3 Analysis of RNA-seq recompute expression data Aug 24, 2017
Nextflow 76 RNA-seq analysis pipeline for detection gene-fusions Jul 28, 2022
R 10 Profile RNA-seq data using published TB gene signatures Nov 22, 2022
Python 80 phasing and Allele Specific Expression from RNA-seq Oct 11, 2022
Python 8 The gEAR Portal was created as a data archive and viewer for gene expression data … Jan 17, 2023
R 2 Source code of the BgeeCall R package, for automatic RNA-Seq present/absent gene expression calls generation Mar 06, 2023
Jupyter Notebook 5 :bar_chart: :microscope: Python package for normalization of gene expression matrices. Oct 20, 2020
R 2 GCA: Gene Correlation Analysis for Single-cell RNA-seq data Jun 06, 2019
Python 155 Differential expression analysis for single-cell RNA-seq data. Apr 06, 2023
None 2 Differential expression analysis for single-cell RNA-seq data Apr 14, 2021
Python 18 Rna-seq pipeline, From FASTQ to differential expression analysis... Oct 08, 2020
R 9 Differential expression analysis for single-cell RNA-seq data Nov 15, 2022
R 84 A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential … Apr 22, 2023
R 91 Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets Apr 11, 2023
R 3 Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data Oct 31, 2022
R 19 RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic … Feb 02, 2022
Python 14 RNA-seq pipeline for raw sequence alignment and transcript/gene quantification. Aug 09, 2022
R 6 Workflow for creating gene module predictors from RNA-Seq of MDD Mar 30, 2022
None 38 Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project Aug 28, 2022
R 3 Analyze ERCC spike-in RNA controls in Differential Gene Expression Experiments Jul 06, 2015
None 8 A treatise on quantification and differential expression from RNA-seq data Nov 05, 2015
R 9 Single cell analysis tools for expression from RNA-seq in R Feb 10, 2024
C++ 29 Software for exploration of gene expression data from single-cell RNA sequencing. May 10, 2022
HTML 2 Gene-expression analysis with RNA sequencing data using R in BioinforSummer 2019 Dec 09, 2019
C 1305 RNA-seq aligner Aug 17, 2022
Python 3 RNA-Seq pipeline May 04, 2021
Shell 3 RNA-seq analyses. May 16, 2022
R 18 RNA-seq analysis Sep 21, 2022
C 3 RNA-seq aligner Jul 20, 2020
C++ 8 RNA-Seq sampling Mar 13, 2023
Python 35 EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data. Jul 25, 2022
HTML 2 A benchmark of existing gene co-expression estimator on scRNA-seq data. Jan 26, 2023
R 6 ChIP-seq Intersample Normalization Aug 05, 2022
R 20 An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific … Feb 27, 2023
R 3 A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq. Jan 20, 2022
Python 2 Best practices, scripts and workflows for performing bulk RNA-seq expression analyses Jul 27, 2023
R 9 ReQTL: Identifying correlations between expressed SNVs and gene expression using RNA-sequencing data Nov 03, 2022
None 22 This github repository contains code to reproduce the analysis in our paper "Variability in estimated … Apr 25, 2023
Python 3 GenExSt: A Tool to Identify Correlation of Gene Expression after Normalization with Housekeeping Genes Dec 01, 2022
R 2 Gene Expression Phylogenies Jan 28, 2023
R 1240 Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working … Apr 24, 2023
None 3 Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working … Oct 28, 2021
R 6 Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working … Feb 26, 2022