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R |
91 |
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets |
Apr 11, 2023 |
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Python |
12 |
Normalization of RNA-seq gene expression |
Apr 21, 2023 |
|
Python |
155 |
Differential expression analysis for single-cell RNA-seq data. |
Apr 06, 2023 |
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None |
2 |
Differential expression analysis for single-cell RNA-seq data |
Apr 14, 2021 |
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R |
9 |
Differential expression analysis for single-cell RNA-seq data |
Nov 15, 2022 |
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R |
2 |
GCA: Gene Correlation Analysis for Single-cell RNA-seq data |
Jun 06, 2019 |
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Python |
32 |
A fully automated gene annotator from RNA-Seq expression data |
May 13, 2022 |
|
Python |
47 |
Pileup biallelic SNPs from single-cell and bulk RNA-seq data |
Aug 11, 2022 |
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MATLAB |
3 |
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) |
Oct 14, 2020 |
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HTML |
34 |
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution |
Aug 17, 2022 |
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C++ |
348 |
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data |
Apr 27, 2023 |
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R |
84 |
A single cell RNA-seq workflow, including highly variable gene analysis, cell type assignment and differential … |
Apr 22, 2023 |
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C++ |
29 |
Software for exploration of gene expression data from single-cell RNA sequencing. |
May 10, 2022 |
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HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
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None |
57 |
RNA-seq workflow: gene-level exploratory analysis and differential expression |
Apr 27, 2023 |
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HTML |
71 |
A simple RNA-Seq differential gene expression pipeline using Nextflow |
May 15, 2023 |
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Mathematica |
17 |
A library for the deconvolution of bulk cell samples using single-cell RNA expression data. |
Feb 15, 2023 |
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Python |
20 |
Bulk RNA-seq analysis. |
Aug 07, 2022 |
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R |
20 |
Inferring gene co-expression networks from single cell gene expression data |
Feb 07, 2023 |
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R |
101 |
Code for evaluation of differential expression methods in single-cell RNA-seq data |
Feb 15, 2023 |
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Perl |
10 |
Code base for profiling highly replicated differential gene expression RNA-seq. |
Jan 09, 2023 |
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Ruby |
48 |
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal |
Aug 09, 2022 |
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Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
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Jupyter Notebook |
3 |
Analysis of RNA-seq recompute expression data |
Aug 24, 2017 |
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Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |
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Shell |
9 |
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq … |
Sep 14, 2022 |
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HTML |
36 |
Introduction to bulk RNA-seq |
Aug 08, 2022 |
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R |
9 |
Single cell analysis tools for expression from RNA-seq in R |
Feb 10, 2024 |
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R |
14 |
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates. |
Jan 31, 2023 |
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Python |
2 |
Best practices, scripts and workflows for performing bulk RNA-seq expression analyses |
Jul 27, 2023 |
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Python |
4 |
Single-cell RNA-seq data analysis and visualization |
Jun 12, 2022 |
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TeX |
2 |
Analysis of single cell RNA-seq data course |
Sep 25, 2019 |
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Jupyter Notebook |
2 |
Doublet detection in single-cell RNA-seq data. |
May 19, 2020 |
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None |
27 |
Detect doublets in single-cell RNA-seq data |
Apr 05, 2023 |
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TeX |
49 |
Analysis of single cell RNA-seq data course |
Apr 23, 2023 |
|
Python |
36 |
Dimensionality reduction for single cell RNA-seq data |
Dec 09, 2022 |
|
Python |
3 |
Doublet detection in single-cell RNA-seq data. |
Aug 22, 2018 |
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C++ |
96 |
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on … |
Mar 30, 2023 |
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R |
10 |
Profile RNA-seq data using published TB gene signatures |
Nov 22, 2022 |
|
Python |
7 |
Single Cell RNA-seq Pipeline |
May 18, 2022 |
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Shell |
2 |
Single Cell RNA-Seq Imputation |
Mar 31, 2021 |
|
Python |
2 |
Single cell RNA-seq tools |
Jul 20, 2022 |
|
Python |
4 |
single-cell RNA-seq clustering |
Jul 27, 2021 |
|
HTML |
299 |
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell … |
Apr 20, 2023 |
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R |
3 |
Measuring cell-to-cell gene expression variability in single-cell RNA-sequencing data: a comparative analysis and applications to … |
Apr 20, 2023 |
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HTML |
12 |
Gene expression viewer template |
Feb 01, 2022 |
|
Python |
13 |
Tools for generating single-cell gene expression data |
Mar 10, 2023 |
|
Python |
25 |
Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a … |
Jul 26, 2022 |
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R |
2 |
Preprocessing of Droplet-based Single-Cell RNA-seq Data |
Sep 24, 2020 |
|
R |
163 |
R package for analyzing single-cell RNA-seq data |
Apr 03, 2023 |