|
Python |
4 |
Single-cell RNA-seq data analysis and visualization |
Jun 12, 2022 |
|
Python |
2 |
Awesome single-cell CITE-sequencing Pipeline |
Jul 19, 2022 |
|
Python |
2 |
Single-cell RNA Sequencing Data Analysis |
Jul 14, 2023 |
|
R |
114 |
Signature Analysis and Visualization for Single-Cell RNA-seq |
Apr 18, 2023 |
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Nextflow |
2 |
Single Cell Genome Sequencing data analysis pipeline |
Nov 08, 2022 |
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HTML |
3 |
Visualization and analysis of single-cell RNA-seq data by alternative clustering |
May 10, 2022 |
|
HTML |
2 |
single-cell sequencing,TCR analysis,scRNA-sequencing |
Jan 22, 2024 |
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Java |
6 |
Single-Cell RNA Seq analysis and visualization package for Cytoscape |
Feb 14, 2022 |
|
HTML |
13 |
single cell sequencing analysis tutorial |
Jun 02, 2022 |
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Common Workflow Language |
4 |
CWL toolkit for single-cell sequencing data analysis |
Jan 22, 2023 |
|
TeX |
2 |
Analysis of single cell RNA-seq data course |
Sep 25, 2019 |
|
TeX |
49 |
Analysis of single cell RNA-seq data course |
Apr 23, 2023 |
|
Jupyter Notebook |
66 |
A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments. |
Nov 08, 2022 |
|
C |
3 |
Recovery of transcriptome subsets from pooled single cell RNA sequencing libraries |
Sep 25, 2022 |
|
HTML |
82 |
Single cell RNA sequencing analysis course |
Aug 16, 2022 |
|
Python |
40 |
Metacells - Single-cell RNA Sequencing Analysis |
May 05, 2023 |
|
R |
2 |
Adaptive Visualization for Single-cell RNA-seq |
Apr 07, 2023 |
|
Python |
155 |
Differential expression analysis for single-cell RNA-seq data. |
Apr 06, 2023 |
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None |
2 |
Differential expression analysis for single-cell RNA-seq data |
Apr 14, 2021 |
|
R |
9 |
Differential expression analysis for single-cell RNA-seq data |
Nov 15, 2022 |
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None |
3 |
Analysis code for lungfish single cell RNA-seq data |
Sep 22, 2023 |
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R |
22 |
Single cell RNA-seq analysis bundle |
Mar 28, 2023 |
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Nextflow |
12 |
Complete analysis workflow for single-cell/nuclei RNA-sequencing data. |
Jan 05, 2022 |
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R |
3 |
Analysis of single-cell ATAC-seq data using topic models. |
Apr 06, 2023 |
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R |
4 |
Analysis of single-cell RNA-seq data using topic models. |
Mar 24, 2023 |
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R |
2 |
GCA: Gene Correlation Analysis for Single-cell RNA-seq data |
Jun 06, 2019 |
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R |
2 |
Analysis Pipeline for Single Cell ATAC-seq |
Jul 30, 2022 |
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C++ |
8 |
Imputation of single cell sequencing data |
Apr 21, 2023 |
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HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
|
TeX |
27 |
Repo for Physalia course Analysis of Single Cell RNA-Seq data |
Apr 11, 2022 |
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HTML |
3 |
Third-generation single cell sequencing (Pacbio) analysis pipeline. |
Apr 23, 2023 |
|
R |
7 |
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysis |
Feb 15, 2023 |
|
Python |
3 |
Single Cell RNA-seq Analysis by Topic Modeling |
May 24, 2022 |
|
Python |
4 |
Single Cell RNA-Seq analysis toolbox for Python |
Sep 13, 2018 |
|
Python |
65 |
Toolkit for highly memory efficient analysis of single-cell RNA-Seq, scATAC-Seq and CITE-Seq data. Analyze atlas … |
Apr 28, 2023 |
|
Python |
7 |
Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model -- … |
Mar 20, 2023 |
|
None |
13 |
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. |
Dec 01, 2022 |
|
None |
3 |
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. |
Jun 17, 2017 |
|
None |
4 |
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc. |
Oct 28, 2018 |
|
Python |
22 |
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation: |
Apr 12, 2024 |
|
R |
3 |
Tree based marker finding and gating visualization for single cell rna seq data |
Jun 23, 2020 |
|
Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
|
Python |
18 |
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell … |
Mar 31, 2023 |
|
R |
441 |
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data |
May 10, 2023 |
|
HTML |
18 |
scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data |
May 14, 2023 |
|
R |
242 |
Table of software for the analysis of single-cell RNA-seq data. |
Aug 13, 2022 |
|
R |
3 |
Table of software for the analysis of single-cell RNA-seq data. |
Apr 08, 2022 |
|
C++ |
72 |
Pipeline for initial analysis of droplet-based single-cell RNA-seq data |
Jul 07, 2022 |
|
Shell |
2 |
Processing CITE-seq and cell hashing datasets with Cell Ranger |
Apr 28, 2024 |
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Jupyter Notebook |
2 |
single-cell RNA-seq |
Mar 28, 2023 |