|
Cython |
10 |
Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation. |
Jul 28, 2022 |
|
None |
4 |
Fast whole genome phylogeny |
Jan 22, 2021 |
|
R |
23 |
Allele-specific copy number estimation with whole genome sequencing |
Feb 22, 2023 |
|
C++ |
98 |
Fast HLA type inference from whole-genome data |
May 04, 2023 |
|
C++ |
321 |
Fast genome and metagenome distance estimation using MinHash |
Oct 11, 2022 |
|
Python |
5 |
Whole genome workflows |
Jul 28, 2022 |
|
C++ |
121 |
A fast whole-genome aligner based on de Bruijn graphs |
May 19, 2023 |
|
Python |
8 |
Whole Genome Annotation Pipeline |
Aug 13, 2022 |
|
Nextflow |
20 |
Whole Exome/Whole Genome Sequencing alignment pipeline |
Oct 18, 2022 |
|
Jupyter Notebook |
4 |
A structural molecular similarity metric based on fast MCS estimation |
Aug 24, 2023 |
|
Python |
2 |
Clinical Whole Genome Sequencing Pipeline |
May 12, 2022 |
|
Shell |
5 |
SNVPhyl whole genome phylogenomics pipeline. |
Feb 13, 2023 |
|
Perl |
4 |
DNANexus Whole Genome Bisulphite Analysis Pipeline |
Nov 15, 2018 |
|
Nextflow |
14 |
Whole Genome Sequenceing Structural Variation Pipelines |
Mar 08, 2022 |
|
Julia |
74 |
Julia for Whole-genome Analysis Software |
Aug 17, 2022 |
|
Python |
4 |
(SARS2) Genome-based incidence estimation |
May 17, 2022 |
|
C++ |
19 |
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics. |
Feb 10, 2023 |
|
Python |
14 |
ENCODE whole-genome bisulfite sequencing (WGBS) pipeline |
May 24, 2022 |
|
C |
71 |
Whole Genome Simulator for Next-Generation Sequencing |
Jul 21, 2022 |
|
HTML |
5 |
Visualize whole genome alignments as linear maps |
May 19, 2020 |
|
Perl |
5 |
Direct genome-wide identification of G-quadruplex structures by whole-genome resequencing |
May 20, 2022 |
|
Python |
2 |
Hand Keypoint estimation without whole body |
Jun 21, 2020 |
|
C |
83 |
Flexible genotype query among 30,000+ samples whole-genome |
Aug 09, 2022 |
|
Perl |
8 |
Whole genome core alignments from multiple draft genomes |
Feb 12, 2023 |
|
Perl |
6 |
Scripts used for whole genome analysis comparison (WGAC) |
Jan 18, 2022 |
|
R |
11 |
West Coast Dream Team Whole Genome Bisulfite Sequencing |
Apr 22, 2022 |
|
C++ |
3 |
Identification of genomic differences from whole-genome alignments |
Nov 29, 2022 |
|
Shell |
87 |
Making whole bacterial genome sequencing data analysis easy |
Apr 30, 2023 |
|
R |
64 |
Genome wide orthology inference and dNdS estimation |
Apr 26, 2023 |
|
None |
2 |
Fast Similarity Digest Search |
Sep 03, 2020 |
|
Python |
24 |
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a … |
Apr 05, 2023 |
|
Python |
7 |
CoVarPlot - Covarage Variant Plots for viral whole genome sequencing |
May 06, 2022 |
|
Python |
2 |
Pipeline for processing whole-genome Population STARR-seq data |
May 28, 2021 |
|
Perl |
3 |
Tools/scripts for the SNVPhyl whole genome phylogenomics pipeline |
Feb 14, 2022 |
|
Python |
7 |
Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data |
Dec 17, 2022 |
|
JavaScript |
33 |
A Whole Genome Alignment Visualization Tool for the Web |
Feb 03, 2023 |
|
C++ |
24 |
Select primer sets for selective whole genome amplification (SWGA) |
Feb 10, 2023 |
|
C++ |
2 |
A Scalable GPU System for Pairwise Whole Genome Alignments |
Oct 22, 2022 |
|
Nextflow |
3 |
Quantify microbial abundance from whole-genome shotgun sequencing data |
Feb 15, 2023 |
|
Python |
3 |
Imputation workflow for low coverage whole genome sequencing data |
Apr 10, 2023 |
|
C++ |
7 |
Fast viral consensus genome reconstruction |
May 17, 2023 |
|
Python |
3 |
Fast cosine similarity for Python |
Feb 18, 2022 |
|
Rust |
67 |
Fast, robust ANI and aligned fraction for metagenomic genomes and contigs |
Mar 28, 2023 |
|
C++ |
120 |
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data |
May 04, 2023 |
|
R |
7 |
Visualization toolkit for SARS-CoV-2 whole genome sequencing data |
Aug 07, 2022 |
|
R |
16 |
Inferring expressed genes by whole-genome sequencing of plasma DNA |
Sep 18, 2022 |
|
Python |
74 |
Python package and CLI for whole-genome duplication related analyses |
May 23, 2023 |
|
R |
3 |
DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS) |
May 15, 2022 |
|
C++ |
130 |
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies. |
May 08, 2023 |
|
JavaScript |
272 |
Fast, flexible and extensible genome browser. |
May 14, 2023 |