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|
Python |
29 |
Amplicon sequence processing workflow using QIIME 2 and Snakemake |
Apr 01, 2023 |
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|
Python |
28 |
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake |
May 10, 2022 |
|
|
Python |
4 |
HiFi Amplicon Workflow |
Mar 14, 2023 |
|
|
None |
3 |
amplicon analysis workflow (OTU) |
Feb 01, 2023 |
|
|
Python |
3 |
Snakemake template for microbial amplicon sequence analysis with mothur. |
Feb 09, 2023 |
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|
Python |
11 |
Ancient microbiome snakemake workflow |
Mar 15, 2023 |
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|
Python |
3 |
Small snakemake best practice workflow |
Mar 18, 2022 |
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|
Python |
12 |
Snakemake workflow for neoantigen prediction |
Apr 28, 2023 |
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|
Python |
2 |
Snakemake Workflow For WGBS Data |
Jan 10, 2022 |
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|
HTML |
15 |
:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences. |
Sep 12, 2022 |
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|
Python |
14 |
curPrimers is a tool for trimming primer sequences from amplicon based NGS reads |
Nov 14, 2022 |
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|
Python |
8 |
A snakemake workflow for metagenomic projects |
Apr 01, 2022 |
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Python |
2 |
Snakemake workflow for comprehensive ONT analysis |
Mar 31, 2023 |
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|
Python |
2 |
A Snakemake workflow for fungal metatranscriptomics |
Feb 15, 2022 |
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Python |
3 |
Snakemake workflow for evaluation of assemblies |
Mar 07, 2022 |
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|
Python |
4 |
snakemake workflow comparing Genrich and MACS2 |
Nov 09, 2020 |
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|
Python |
8 |
Snakemake workflow for the vg toolkit. |
Apr 25, 2023 |
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|
Python |
5 |
Snakemake workflow to call germline variant |
Oct 15, 2019 |
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|
Python |
3 |
A small ncRNA workflow in Snakemake. |
Dec 07, 2022 |
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|
Python |
3 |
Some NGS workflow created by snakemake |
Apr 21, 2023 |
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|
Python |
2 |
A snakemake workflow for using tsinfer |
Oct 30, 2023 |
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|
Nextflow |
91 |
Amplicon sequencing analysis workflow using DADA2 and QIIME2 |
Aug 19, 2022 |
|
|
Nextflow |
11 |
TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon … |
Jul 08, 2022 |
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|
Python |
5 |
snakemake workflow for bulk RNA-seq workflow using STAR-edgeR |
Oct 25, 2022 |
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|
Python |
14 |
snakemake workflow for post-processing scATACseq data |
Oct 04, 2022 |
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|
Python |
3 |
Snakemake workflow to analyze bulk RNA-seq |
Nov 08, 2022 |
|
|
Jupyter Notebook |
9 |
Modular snakemake workflow for assembly-based metagenomics |
Dec 06, 2022 |
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|
Python |
2 |
A snakemake workflow for assembly with HiFi |
May 01, 2024 |
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|
None |
7 |
Inaka's Swift Coding Guidelines |
Jul 06, 2021 |
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|
TeX |
8 |
Online workflow guidelines for metabolomics |
Jul 09, 2022 |
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R |
4 |
RNA-Seq Workflow Based on Snakemake and Conda |
May 28, 2020 |
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|
Python |
3 |
A Snakemake workflow for germline variant burden analyses. |
Mar 23, 2022 |
|
|
Shell |
41 |
A Github action for running a Snakemake workflow |
Jun 15, 2022 |
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|
R |
8 |
Snakemake workflow to benchmark scRNA-seq data simulators |
Feb 11, 2023 |
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|
Python |
7 |
Snakemake workflow for comparison of differential abundance ranks |
Aug 14, 2022 |
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|
Python |
8 |
A Snakemake workflow for Fermi-LAT data reduction |
Oct 27, 2023 |
|
|
Swift |
19 |
A multitrack range slider for trimming videos. (swift 5) |
Dec 12, 2022 |
|
|
Python |
2 |
A reproducible and scalable workflow for Long Amplicon Consensus Analysis (LACA) |
Mar 04, 2023 |
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|
Python |
2 |
Reproducibility and package management : workflow languages (CWL, Snakemake, Conda). |
Aug 03, 2022 |
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|
R |
3 |
Snakemake workflow for 10X Genomics WGS analysis using TitanCNA |
Apr 20, 2022 |
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|
Python |
199 |
This Snakemake pipeline implements the GATK best-practices workflow |
Apr 23, 2023 |
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|
Python |
5 |
A repo for the Twist HiFi capture/snakemake workflow |
Apr 20, 2023 |
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|
HTML |
2 |
👻 Ghost theme implementing Material design guidelines. |
Feb 04, 2020 |
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|
Python |
2 |
Snakemake BIDS app for denoising fmriprep, uses the snakebids package for running snakemake workflow as … |
Jul 18, 2021 |
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|
Python |
4 |
Snakemake-based workflow for generating artificial genomes with structural variants |
Feb 03, 2022 |
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|
Python |
5 |
Snakemake workflow for functional analysis of metagenomic WGS read data. |
Mar 12, 2022 |
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|
Python |
5 |
Snakemake workflow for modelling-to-generate-alternatives with PyPSA-Eur |
Jun 03, 2022 |
|
|
Python |
3 |
Command line bioinformatics workflows, created with Snakemake workflow management tool. |
Mar 26, 2021 |
|
|
Python |
42 |
Snakemake-based workflow for detecting structural variants in WGS data |
Jul 31, 2022 |
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|
Python |
3 |
A Snakemake workflow for large-scale SARS-CoV-2 analyses. |
Mar 23, 2022 |