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R |
31 |
simpler single cell RNAseq data clustering |
Dec 14, 2022 |
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R |
2 |
simpler single cell RNAseq data Visualization |
Jul 13, 2022 |
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R |
41 |
Inference of cell-cell communication from single-cell RNAseq data |
Apr 06, 2023 |
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Nextflow |
59 |
A single-cell RNAseq pipeline for 10X genomics data |
Jul 27, 2022 |
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R |
24 |
Gene set enrichment analysis for single-cell RNAseq data |
May 17, 2023 |
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Python |
2 |
Negative binomial matrix factorization from single-cell RNAseq data |
May 19, 2021 |
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R |
49 |
R package for Protein activity analysis of single-cell RNAseq. |
May 11, 2023 |
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None |
3 |
R package for Protein activity analysis of single-cell RNAseq. |
Oct 23, 2023 |
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Python |
29 |
BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data |
Sep 18, 2022 |
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Python |
110 |
TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data |
May 10, 2023 |
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Dockerfile |
2 |
An environment for single-cell RNAseq |
Feb 13, 2023 |
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Python |
2 |
classification of single cell RNAseq results |
Jan 29, 2022 |
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Python |
3 |
single-cell RNAseq ATACseq processing pipeline |
Sep 19, 2021 |
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Python |
4 |
Tool for group biology estimation in single-cell RNAseq data |
Dec 18, 2022 |
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MATLAB |
3 |
Single Cell RNA-Seq imputAtion constrained By BuLk RNAsEq data (SCRABBLE) |
Oct 14, 2020 |
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HTML |
3 |
Robustly infer regulatory relationships in single-cell CRISPR screens. |
Jun 08, 2022 |
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R |
2 |
single cell RNAseq analysis of HFpEF mice model |
Feb 01, 2023 |
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Python |
2 |
PARAFAC2 for modeling multi-sample single-cell RNAseq. |
Mar 13, 2024 |
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Jupyter Notebook |
36 |
identifying disease critical cell types and programs from single cell RNAseq |
Jun 01, 2023 |
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Python |
8 |
A Snakemake pipeline for cellranger to process 10x single-cell RNAseq data |
Oct 04, 2022 |
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R |
9 |
Workflow for the analysis fo single-cell RNASeq data using R/bioconductor |
Nov 07, 2022 |
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R |
4 |
Deterministic annealing gaussian mixtures models for single cell RNAseq |
Apr 03, 2023 |
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Jupyter Notebook |
40 |
Identify cell barcodes from single-cell genomics sequencing experiments |
May 06, 2022 |
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R |
5 |
Identify cell type based on cell markers for single cell squencing |
Apr 19, 2022 |
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C++ |
21 |
An analytics package for single cell data |
Oct 31, 2022 |
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R |
6 |
R package for analysing single cell data |
Nov 25, 2022 |
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Jupyter Notebook |
5 |
Vector representations of gene co-expression in single cell RNAseq. |
Jul 27, 2022 |
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HTML |
3 |
Fred Hutch Single Cell RNASeq Analysis - Hands on workshop 3 |
Apr 14, 2019 |
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R |
4 |
Package for visualizing high-dimensional single-cell data |
Sep 06, 2021 |
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R |
163 |
R package for analyzing single-cell RNA-seq data |
Apr 03, 2023 |
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Python |
10 |
Python package designed for single-cell calling cards data |
Jan 16, 2023 |
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R |
20 |
A R package for advanced single cell data viz |
Apr 21, 2023 |
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R |
2 |
Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in … |
Jun 01, 2022 |
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R |
64 |
Cell type prioritization in single-cell data |
Apr 18, 2023 |
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Julia |
2 |
A Julia package for single cell and spatial data analysis |
May 07, 2023 |
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Jupyter Notebook |
5 |
Bostongene cell deconvolution algorithm from RNAseq |
Aug 15, 2022 |
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HTML |
7 |
An R package for performing cell typing in SMI and other single cell data |
Apr 20, 2023 |
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R |
4 |
An R package for simulating cell-type specific and hierarchical single-cell expression data |
Feb 10, 2023 |
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R |
25 |
Obtain trait-relevant cell subpopulations by incorporating pathway activity transformed scRNA-seq data with GWAS data |
Feb 02, 2024 |
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Jupyter Notebook |
30 |
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single … |
Apr 11, 2023 |
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R |
4 |
OHSU-ONPRC Single-cell Analysis Package |
Jan 14, 2021 |
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HTML |
9 |
Build predicted cell-cell interaction networks from single-cell data. |
Dec 14, 2022 |
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R |
2 |
Interactive single cell data browser |
Mar 03, 2022 |
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R |
25 |
Single cell data integrative analysis |
Apr 18, 2023 |
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Python |
3 |
Distributed single-cell data analysis. |
Apr 18, 2023 |
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HTML |
9 |
Supplementary files for paper "Detection and removal of barcode swapping in single-cell RNAseq". |
Aug 24, 2019 |
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R |
8 |
Reference-free celltype and phenotype annotation in single cell RNAseq by learning geneset representations |
Nov 02, 2023 |
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R |
17 |
R package for the inference of cell fate bias from single-cell RNA-seq data. |
Jul 14, 2022 |
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R |
255 |
R package for detecting doublets in single-cell RNA sequencing data |
Apr 28, 2023 |
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R |
20 |
An R package to analyze single-cell V(D)J data |
Mar 10, 2023 |