|
Python |
3 |
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data |
Dec 21, 2022 |
|
Python |
2 |
SIMS: Scalable, Interpretable Models for Cell Annotation of large scale single-cell RNA-seq data |
Nov 27, 2023 |
|
JavaScript |
135 |
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets |
Aug 07, 2022 |
|
R |
33 |
Evolutionary Transcriptomics with R |
May 16, 2023 |
|
R |
3 |
Assess the quality of large RNA-seq cohorts |
May 26, 2022 |
|
R |
2 |
Interpretation of RNA-seq data |
Apr 04, 2022 |
|
Perl |
5 |
UROBORUS: circular RNA identification from RNA-Seq data |
Jun 16, 2020 |
|
Jupyter Notebook |
84 |
scDeepCluster for Single Cell RNA-seq data |
Apr 18, 2023 |
|
Python |
2 |
Pipeline for investigating RNA structure-Seq data |
May 15, 2021 |
|
C |
2 |
RIsearch: a tool for large-scale RNA–RNA, RNA-DNA, and DNA-DNA interaction prediction |
Sep 19, 2022 |
|
C# |
6 |
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data |
Mar 02, 2022 |
|
R |
21 |
an integrative analysis tool for analysing large-scale single cell RNA-sequencing data |
Apr 13, 2023 |
|
Jupyter Notebook |
61 |
A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation. |
Jul 17, 2022 |
|
Jupyter Notebook |
2 |
Single nuclei RNA-seq oxytocin data |
Mar 05, 2022 |
|
HTML |
2 |
Cluster single cell RNA-seq data |
Sep 30, 2020 |
|
CSS |
20 |
Workshop • Analysis of RNA-seq data |
Jul 18, 2022 |
|
Python |
3 |
Find circRNAs in RNA-seq data. |
Feb 02, 2022 |
|
Python |
12 |
Find circRNAs in RNA-seq data. |
Jul 12, 2022 |
|
HTML |
9 |
QC and cell type assignment for patch-seq transcriptomics data |
Aug 02, 2022 |
|
R |
3 |
Experiment Data Package for TCGA processed RNA-Seq data |
Dec 10, 2020 |
|
Python |
36 |
Dimensionality reduction for single cell RNA-seq data |
Dec 09, 2022 |
|
R |
2 |
RNA-Seq: Data Readiness for Machine Learning Applications |
Jun 27, 2023 |
|
HTML |
2 |
script for RNA-seq and Chip-seq |
Apr 17, 2021 |
|
HTML |
6 |
A comprehensive analysis tool for Ribo-seq and small RNA-seq data |
May 02, 2022 |
|
R |
2 |
RUVIII-PRPS: Removing unwanted variation from large-scale RNA sequencing data with PRPS |
Mar 27, 2024 |
|
Python |
6 |
CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data |
May 24, 2022 |
|
Jupyter Notebook |
3 |
Analysis of RNA-seq recompute expression data |
Aug 24, 2017 |
|
Jupyter Notebook |
16 |
Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation |
Jul 08, 2022 |
|
C |
1305 |
RNA-seq aligner |
Aug 17, 2022 |
|
Python |
3 |
RNA-Seq pipeline |
May 04, 2021 |
|
Shell |
3 |
RNA-seq analyses. |
May 16, 2022 |
|
R |
18 |
RNA-seq analysis |
Sep 21, 2022 |
|
C |
3 |
RNA-seq aligner |
Jul 20, 2020 |
|
C++ |
8 |
RNA-Seq sampling |
Mar 13, 2023 |
|
R |
3 |
Analysis of differential RNA splicing from RNA-seq time series data |
May 10, 2017 |
|
R |
16 |
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set |
May 28, 2020 |
|
Nextflow |
7 |
Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous … |
May 16, 2022 |
|
R |
3 |
A heuristic method for fast BCR clonal family inference from large-scale AIRR-seq data |
Mar 06, 2024 |
|
Python |
19 |
Somatic indel discovery tool for tumor RNA-Seq data. |
Dec 05, 2022 |
|
R |
3 |
A workflow for exploring and analyzing RNA-seq data. |
Dec 07, 2021 |
|
Python |
17 |
User-submitted RNA-seq data analysis tools for BioJupies. |
Dec 09, 2021 |
|
R |
163 |
R package for analyzing single-cell RNA-seq data |
Apr 03, 2023 |
|
Python |
155 |
Differential expression analysis for single-cell RNA-seq data. |
Apr 06, 2023 |
|
None |
2 |
Differential expression analysis for single-cell RNA-seq data |
Apr 14, 2021 |
|
Python |
7 |
Data Analysis For FLAM-Seq Third Generation RNA Sequencing |
Dec 18, 2022 |
|
R |
9 |
Differential expression analysis for single-cell RNA-seq data |
Nov 15, 2022 |
|
None |
6 |
Cleveland Clinic Bioinformatics Workshop for RNA-Seq data analysis |
Feb 15, 2023 |
|
Python |
84 |
:snake: Snakefiles for common RNA-seq data analysis workflows. |
Mar 13, 2023 |
|
None |
3 |
Analysis code for lungfish single cell RNA-seq data |
Sep 22, 2023 |
|
R |
3 |
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data |
Oct 31, 2022 |